Evidence map›Paper›PMID 31289280›Full record

ArticleScientific reports2019

Peat substrate amended with chitin modulates the N-cycle, siderophore and chitinase responses in the lettuce rhizobiome.

C De Tender, B Mesuere, F Van der Jeugt, A Haegeman, T Ruttink, B Vandecasteele, P Dawyndt, J Debode, E E Kuramae

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed
8.1field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed, 70 citations in OpenAlex.

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  8. International journal of systematic and evolutionary microbiology · 2024
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  15. Microbiology spectrum · 2022
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 2 countries.

C De TenderFlanders Research Institute for Agriculture, Fisheries and Food, Plant Sciences Unit, Burgemeester Van Gansberghelaan 92, 9820, Merelbeke, Belgium. caroline.detender@ilvo.vlaanderen.be.
B MesuereGhent University, Department of Applied Mathematics, Computer Science and Statistics, Krijgslaan 281 S9, 9000, Ghent, Belgium.ORCID http://orcid.org/0000-0003-0610-3441
F Van der JeugtGhent University, Department of Applied Mathematics, Computer Science and Statistics, Krijgslaan 281 S9, 9000, Ghent, Belgium.ORCID http://orcid.org/0000-0003-3168-927X
A HaegemanFlanders Research Institute for Agriculture, Fisheries and Food, Plant Sciences Unit, Burgemeester Van Gansberghelaan 92, 9820, Merelbeke, Belgium.
T RuttinkFlanders Research Institute for Agriculture, Fisheries and Food, Plant Sciences Unit, Burgemeester Van Gansberghelaan 92, 9820, Merelbeke, Belgium.ORCID http://orcid.org/0000-0002-1012-9399
B VandecasteeleFlanders Research Institute for Agriculture, Fisheries and Food, Plant Sciences Unit, Burgemeester Van Gansberghelaan 92, 9820, Merelbeke, Belgium.
P DawyndtGhent University, Department of Applied Mathematics, Computer Science and Statistics, Krijgslaan 281 S9, 9000, Ghent, Belgium.ORCID http://orcid.org/0000-0002-1623-9070
J DebodeFlanders Research Institute for Agriculture, Fisheries and Food, Plant Sciences Unit, Burgemeester Van Gansberghelaan 92, 9820, Merelbeke, Belgium.ORCID http://orcid.org/0000-0001-8509-5413
E E KuramaeNetherlands Institute of Ecology, department of Microbial Ecology, Droevendaalsesteeg 10, 6708 PB, Wageningen, The Netherlands.ORCID http://orcid.org/0000-0001-6701-8668
Ghent University · BENetherlands Institute of Ecology · NLUniversity College Ghent · BE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Chitin is a valuable peat substrate amendment by increasing lettuce growth and reducing the survival of the zoonotic pathogen Salmonella enterica on lettuce leaves. The production of chitin-catabolic enzymes (chitinases) play a crucial role and are mediated through the microbial community. A higher abundance of plant-growth promoting microorganisms and genera involved in N and chitin metabolism are present in a chitin-enriched substrate. In this study, we hypothesize that chitin addition to peat substrate stimulates the microbial chitinase production. The degradation of chitin leads to nutrient release and the production of small chitin oligomers that are related to plant growth promotion and activation of the plant's defense response. First a shotgun metagenomics approach was used to decipher the potential rhizosphere microbial functions then the nutritional content of the peat substrate was measured. Our results show that chitin addition increases chitin-catabolic enzymes, bacterial ammonium oxidizing and siderophore genes. Lettuce growth promotion can be explained by a cascade degradation of chitin to N-acetylglucosamine and eventually ammonium. The occurrence of increased ammonium oxidizing bacteria, Nitrosospira, and amoA genes results in an elevated concentration of plant-available nitrate. In addition, the increase in chitinase and siderophore genes may have stimulated the plant's systemic resistance.

Indexed as

BacteriaChitinChitinasesLactucaNitrogenNitrogen CycleRhizobiumSiderophoresSoilSubstrate SpecificityChitinChitinasesNitrogenSiderophoresSoil

Identifiers

PMID31289280
PMCPMC6617458
OpenAlexW2957915119

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.