Evidence map›Paper›PMID 31286593›Full record

ArticleHuman mutation2019

LOVD-DASH: A comprehensive LOVD database coupled with diagnosis and an at-risk assessment system for hemoglobinopathies.

Li Zhang, Qianqian Zhang, Yaohua Tang, Peikuan Cong, Yuhua Ye, Shiping Chen, Xinhua Zhang, Yan Chen, Baosheng Zhu, Wangwei Cai and 19 more

Open access · hybridAbstract read
In one paragraph

Article in Human mutation, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
0.9field-weighted citation impact, top 25% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 14 citations in OpenAlex.

  1. Article
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  7. Unique Polymorphisms atJournal of personalized medicine · 2021
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

29 authors at 18 institutions in 2 countries.

Li ZhangDepartment of Medical Genetics, Southern Medical University, Guangzhou, Guangdong, China.ORCID 0000-0002-7079-8308
Qianqian ZhangDepartment of Medical Genetics, Southern Medical University, Guangzhou, Guangdong, China.
Yaohua TangDIAN Diagnostics, Hangzhou, China.
Peikuan CongInstitute for Basic Medical Sciences, Westlake Institute for Advanced Study, Hangzhou, Zhejiang, China.
Yuhua YeDepartment of Medical Genetics, Southern Medical University, Guangzhou, Guangdong, China.
Shiping ChenBGI Clinical Laboratories-Shenzhen, Shenzhen, Guangdong, China.
Xinhua ZhangDepartment of Hematopathology, 303rd Hospital of the People's Liberation Army, Nanning, Guangxi, China.
Yan ChenDepartment of Pediatrics, Affiliated Hospital of Zunyi Medical University, Zunyi, China.
Baosheng ZhuGenetic Diagnosis Center, First People's Hospital of Yunnan Province, Kunming, Yunnan, China.
Wangwei CaiSchool of Basic Medicine, Hainan Medical University, Haikou, Hainan, China.
Shaoke ChenDepartment of Pediatrics, Guangxi Zhuang Autonomous Region Women and Children Health Care Hospital, Nanning, Guangxi, China.
Ren CaiDepartment of Medical Genetics, Liuzhou Municipal Maternity and Child Healthcare Hospital, Liuzhou, Guangxi, China.
Xiaoling GuoDepartment of Pediatrics, Maternity and Child Health Care Hospital of Foshan City, Foshan, Guangdong, China.
Chonglin ZhangDepartment of Clinical Laboratory, Guilin Women and Children health care hospital, Guilin, Guangxi, China.
Yuqiu ZhouDepartment of Clinical Laboratory, Zhuhai Municipal Maternity and Child Healthcare Hospital, Zhuhai, Guangdong, China.
Jie ZouDepartment of Clinical Laboratory, Maternal and Child Health Hospital in Meizhou, Meizhou, Guangdong, China.
Yanhui LiuDepartment of Prenatal Diagnosis Center, Maternal and Child Health Hospital, Dongguan, Guangdong, China.
Biyan ChenDepartment of Clinical Laboratory, Baise Women and Children Care Hospital, Baise, Guangxi, China.
Shanhuo YanDepartment of Clinical Laboratory, Qinzhou Maternal and Child Health Hospital, Qinzhou, Guangxi, China.
Yajun ChenCenter For Prenatal Diagnosis Shaoguan, Shaoguan Municipal Maternity and Child Healthcare Hospital, Guangdong, China.
Yuehong ZhouDepartment of Clinical Laboratory, The People's Hospital of Yunfu City, Yunfu, Guangdong, China.
Hongmei DingDepartment of Clinical Laboratory, Pingguo Women and Children Care Hospital, Baise, Guangxi, China.
Xiarong LiBeijing GeneDock Technology Company, Beijing, China.
Dianyu ChenSchool of Basic Medical Sciences, Zhejiang University, Hangzhou, Zhejiang, China.
Jianmei ZhongDepartment of Medical Genetics, Southern Medical University, Guangzhou, Guangdong, China.
Xuan ShangDepartment of Medical Genetics, Southern Medical University, Guangzhou, Guangdong, China.
Xuanzhu LiuBeijing GeneDock Technology Company, Beijing, China.
Ming QiSchool of Basic Medical Sciences, Zhejiang University, Hangzhou, Zhejiang, China.
Xiangmin XuDepartment of Medical Genetics, Southern Medical University, Guangzhou, Guangdong, China.
Key Laboratory of Guangdong Province · CNAnnoroad Gene Technology (China) · CNBaise University · CNBGI Group (China) · CNYuncheng University · CNZhejiang Chinese Medical University · CNZunyi Medical University · CN181st Hospital of Chinese People's Liberation Army · CN303 Hospital of People's Liberation Army · CNDian Diagnostics (China) · CNDongguan People’s Hospital · CNFirst People's Hospital of Yunnan Province · CNFoshan Maternity and Child Health Care Hospital · CNHainan Medical University · CNLiuzhou Maternal and Child Health Hospital · CNMeizhou City People's Hospital · CNQinzhou Maternity and Child Health Care Hospital · CNWestlake University · CN

Funding

National Key Research and Development program of China 2017YFC1001800National Key Research and Development program of China 2018YFA0507803National Natural Science Foundation of China NSFC 31671314National Natural Science Foundation of China NSFC 81870148Natural Science Foundation of Guangdong Province 2017A030313673Science and Technology Program of Guangzhou 201604020045
6 · The paper itself

Abstract

Hemoglobinopathies are the most common monogenic disorders worldwide. Substantial effort has been made to establish databases to record complete mutation spectra causing or modifying this group of diseases. We present a variant database which couples an online auxiliary diagnosis and at-risk assessment system for hemoglobinopathies (DASH). The database was integrated into the Leiden Open Variation Database (LOVD), in which we included all reported variants focusing on a Chinese population by literature peer review-curation and existing databases, such as HbVar and IthaGenes. In addition, comprehensive mutation data generated by high-throughput sequencing of 2,087 hemoglobinopathy patients and 20,222 general individuals from southern China were also incorporated into the database. These sequencing data enabled us to observe disease-causing and modifier variants responsible for hemoglobinopathies in bulk. Currently, 371 unique variants have been recorded; 265 of 371 were described as disease-causing variants, whereas 106 were defined as modifier variants, including 34 functional variants identified by a quantitative trait association study of this high-throughput sequencing data. Due to the availability of a comprehensive phenotype-genotype data set, DASH has been established to automatically provide accurate suggestions on diagnosis and genetic counseling of hemoglobinopathies. LOVD-DASH will inspire us to deal with clinical genotyping and molecular screening for other Mendelian disorders.

Indexed as

Databases, GeneticMutationChinaFemaleGenetic Association StudiesGenetic Predisposition to DiseaseHemoglobinopathiesHigh-Throughput Nucleotide SequencingHumansRisk AssessmentSequence Analysis, DNAclinical genotypingDASHdatabasehemoglobinopathyLOVDmolecular screening

Identifiers

PMID31286593
PMCPMC6899610
OpenAlexW2958209100

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.