Evidence map›Paper›PMID 31286526›Full record

ArticleJournal of medical virology2019

Distribution of rotavirus genotypes in the postvaccine introduction era in Ashaiman, Greater Accra Region, Ghana, 2014-2016.

Victor Letsa, Susan Damanka, Francis Dennis, Belinda Lartey, George E Armah, Naga Betrapally, Rashi Gautam, Mathew D Esona, Michael D Bowen, Osbourne Quaye

Abstract read
In one paragraph

Article in Journal of medical virology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
  2. Article
  3. Article
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Victor LetsaWest African Centre for Cell Biology of Infectious Pathogens (WACCBIP), Department of Biochemistry, Cell and Molecular Biology, University of Ghana, Accra, Ghana.
Susan DamankaNoguchi Memorial Institute for Medical Research, University of Ghana, Accra, Ghana.
Francis DennisNoguchi Memorial Institute for Medical Research, University of Ghana, Accra, Ghana.
Belinda LarteyNoguchi Memorial Institute for Medical Research, University of Ghana, Accra, Ghana.
George E ArmahNoguchi Memorial Institute for Medical Research, University of Ghana, Accra, Ghana.
Naga BetrapallyDivision of Viral Diseases, NCIRD, Centers for Disease Control and Prevention, Atlanta, Georgia.
Rashi GautamDivision of Viral Diseases, NCIRD, Centers for Disease Control and Prevention, Atlanta, Georgia.
Mathew D EsonaDivision of Viral Diseases, NCIRD, Centers for Disease Control and Prevention, Atlanta, Georgia.
Michael D BowenDivision of Viral Diseases, NCIRD, Centers for Disease Control and Prevention, Atlanta, Georgia.
Osbourne QuayeWest African Centre for Cell Biology of Infectious Pathogens (WACCBIP), Department of Biochemistry, Cell and Molecular Biology, University of Ghana, Accra, Ghana.ORCID 0000-0002-0621-876X

Funding

Intramural CDC HHS CC999999
6 · The paper itself

Abstract

Group A Rotaviruses (RVAs) are the most important etiological agents of acute gastroenteritis (AGE) in children less than 5 years of age. Mortality resulting from RVA gastroenteritis is higher in developing countries than in developed ones, causing a huge public health burden in global regions like Africa and South-East Asia. This study reports RVA genotypes detected in Ashaiman, Greater Accra Region, Ghana, in the postvaccine introduction era for the period 2014-2016. Stool samples were collected from children less than 5 years of age who visited Ashaiman Polyclinic with AGE from November 2014 to May 2015 and from December 2015 to June 2016. The samples were tested by enzyme immunoassay (EIA), and one-step multiplex reverse transcription polymerase chain reaction was performed on the EIA positive samples for gel-based binomial genotyping. Of the 369 stool samples collected from children with AGE, 145 (39%) tested positive by EIA. Five VP7 (G1, G3, G9, G10, and G12) and three VP4 (P[4], P[6] and P[8]) genotypes were detected. Eight G/P combinations were identified of which, G3P[6], G12P[8], G1P[8], and G9P[4] were the most prevalent and responsible for 93 (68%) of the AGE cases, and seven mixed-types were detected which represented 8% of the RVA cases. High prevalence, diversity, and mixed-types of RVAs were detected from Ashaiman with the emergence of unusual genotypes.

Indexed as

GenotypeAnimalsChild, PreschoolFecesGastroenteritisGhanaHumansInfantPhylogenyPrevalenceRNA, ViralRotavirusRotavirus InfectionsSequence Analysis, DNAZoonosesRNA, ViralAshaimangastroenteritisgenotypesrotavirusRT-PCRVP7 and VP4

Identifiers

PMID31286526
PMCPMC12001282

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.