Evidence map›Paper›PMID 31286362›Full record

ArticleMycopathologia2020

PRP8 Intein in Onygenales: Distribution and Phylogenetic Aspects.

Hans Garcia Garces, Danielle Hamae Yamauchi, Raquel Cordeiro Theodoro, Eduardo Bagagli

Open access · greenAbstract read
PubMed Publisher
In one paragraph

Article in Mycopathologia, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
1.3field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 11 citations in OpenAlex.

  1. Proteolytic and non-proteolytic mechanisms of keratin degradation inApplied and environmental microbiology · 2025
    Article
  2. Calcimycin InhibitsACS infectious diseases · 2022
    Article
  3. Coccidioides Species: A Review of Basic Research: 2022.Journal of fungi (Basel, Switzerland) · 2022
    Review
  4. Journal of fungi (Basel, Switzerland) · 2022
    Article
  5. Review
  6. Inteins as Drug Targets and Therapeutic Tools.Frontiers in molecular biosciences · 2022
    Review
  7. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 1 country.

Hans Garcia GarcesMicrobiology and Immunology Department, Biosciences Institute of Botucatu, State University of Sao Paulo (UNESP), Botucatu, São Paulo, Brazil.
Danielle Hamae YamauchiMicrobiology and Immunology Department, Biosciences Institute of Botucatu, State University of Sao Paulo (UNESP), Botucatu, São Paulo, Brazil.
Raquel Cordeiro TheodoroTropical Medicine Institute of Rio Grande do Norte, Federal University of Rio Grande do Norte, Natal, Rio Grande do Norte, Brazil.
Eduardo BagagliMicrobiology and Immunology Department, Biosciences Institute of Botucatu, State University of Sao Paulo (UNESP), Botucatu, São Paulo, Brazil. bagagli@ibb.unesp.br.ORCID http://orcid.org/0000-0002-8003-4109
Universidade de São Paulo · BRUniversidade Federal do Rio Grande do Norte · BR

Funding

Conselho Nacional de Desenvolvimento Científico e Tecnológico 150886/2018-7Conselho Nacional de Desenvolvimento Científico e Tecnológico 306590/2015-8
6 · The paper itself

Abstract

Inteins (internal proteins) are mobile genetic elements, inserted in housekeeping proteins, with self-splicing properties. Some of these elements have been recently pointed out as modulators of genetic expression or protein function. Herein, we evaluated, in silico, the distribution and phylogenetic patterns of PRP8 intein among 93 fungal strains of the order Onygenales. PRP8 intein(s) are present in most of the species (45/49), mainly as full-length inteins (containing both the Splicing and the Homing Endonuclease domains), and must have transferred vertically in all lineages, since their phylogeny reflects the group phylogeny. While the distribution of PRP8 intein(s) varies among species of Onygenaceae family, being absent in Coccidioides spp. and present as full and mini-intein in other species, they are consistently observed as full-length inteins in all evaluated pathogenic species of the Arthrodermataceae and Ajellomycetaceae families. This conservative and massive PRP8 intein presence in Ajellomycetacean and Arthrodermatecean species reinforces the previous idea that such genetic elements do not decrease the fungal fitness significantly and even might play some role in the host-pathogen relationship, at least in these two fungal groups. We may better position the species Ophidiomyces ophiodiicola (with no intein) in the Onygenaceae family and Onygena corvina (with a full-length intein) as a basal member in the Arthrodermataceae family.

Indexed as

DNA, FungalEvolution, MolecularFungal ProteinsInteinsOnygenalesPhylogenyDNA, FungalFungal ProteinsEvolutionOnygenalesPhylogenyPRP8 intein

Identifiers

PMID31286362
OpenAlexW2960540529

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.