Evidence map›Paper›PMID 31285597›Full record

ArticleNature chemical biology2019

A marine bacterial enzymatic cascade degrades the algal polysaccharide ulvan.

Lukas Reisky, Aurélie Préchoux, Marie-Katherin Zühlke, Marcus Bäumgen, Craig S Robb, Nadine Gerlach, Thomas Roret, Christian Stanetty, Robert Larocque, Gurvan Michel and 9 more

Abstract read
PubMed Publisher
In one paragraph

Article in Nature chemical biology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 74 papers.

0numbers the graph read from it
0cells of the map it votes in
74citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

74 citing papers in PubMed.

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  18. Review
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14 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

19 authors.

Lukas ReiskyDepartment of Biotechnology & Enzyme Catalysis, Institute of Biochemistry, University Greifswald, Greifswald, Germany.ORCID http://orcid.org/0000-0001-8957-4083
Aurélie PréchouxSorbonne Université, CNRS, Integrative Biology of Marine Models, Station Biologique de Roscoff, Roscoff, France.
Marie-Katherin ZühlkePharmaceutical Biotechnology, Institute of Pharmacy, University Greifswald, Greifswald, Germany.ORCID http://orcid.org/0000-0002-8081-9969
Marcus BäumgenDepartment of Biotechnology & Enzyme Catalysis, Institute of Biochemistry, University Greifswald, Greifswald, Germany.
Craig S RobbMax Planck-Institute for Marine Microbiology, Bremen, Germany.
Nadine GerlachMax Planck-Institute for Marine Microbiology, Bremen, Germany.ORCID http://orcid.org/0000-0003-2849-4455
Thomas RoretSorbonne Université, CNRS, FR 2424, Station Biologique de Roscoff, Roscoff, France.ORCID http://orcid.org/0000-0003-2528-5789
Christian StanettyInstitute of Applied Synthetic Chemistry, TU Wien, Vienna, Austria.ORCID http://orcid.org/0000-0001-7692-6932
Robert LarocqueSorbonne Université, CNRS, FR 2424, Station Biologique de Roscoff, Roscoff, France.
Gurvan MichelSorbonne Université, CNRS, Integrative Biology of Marine Models, Station Biologique de Roscoff, Roscoff, France.
Tao SongMax Planck-Institute for Marine Microbiology, Bremen, Germany.
Stephanie MarkertPharmaceutical Biotechnology, Institute of Pharmacy, University Greifswald, Greifswald, Germany.ORCID http://orcid.org/0000-0003-0923-3305
Frank UnfriedPharmaceutical Biotechnology, Institute of Pharmacy, University Greifswald, Greifswald, Germany.ORCID http://orcid.org/0000-0002-9304-4947
Marko D MihovilovicInstitute of Applied Synthetic Chemistry, TU Wien, Vienna, Austria.ORCID http://orcid.org/0000-0002-5438-8368
Anke Trautwein-SchultInstitute of Microbiology, University Greifswald, Greifswald, Germany.ORCID http://orcid.org/0000-0003-3272-5746
Dörte BecherInstitute of Microbiology, University Greifswald, Greifswald, Germany.ORCID http://orcid.org/0000-0002-9630-5735
Thomas SchwederPharmaceutical Biotechnology, Institute of Pharmacy, University Greifswald, Greifswald, Germany. schweder@uni-greifswald.de.ORCID http://orcid.org/0000-0002-7213-3596
Uwe T BornscheuerDepartment of Biotechnology & Enzyme Catalysis, Institute of Biochemistry, University Greifswald, Greifswald, Germany. uwe.bornscheuer@uni-greifswald.de.ORCID http://orcid.org/0000-0003-0685-2696
Jan-Hendrik HehemannMax Planck-Institute for Marine Microbiology, Bremen, Germany. jhhehemann@marum.de.ORCID http://orcid.org/0000-0002-8700-2564

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Marine seaweeds increasingly grow into extensive algal blooms, which are detrimental to coastal ecosystems, tourism and aquaculture. However, algal biomass is also emerging as a sustainable raw material for the bioeconomy. The potential exploitation of algae is hindered by our limited knowledge of the microbial pathways-and hence the distinct biochemical functions of the enzymes involved-that convert algal polysaccharides into oligo- and monosaccharides. Understanding these processes would be essential, however, for applications such as the fermentation of algal biomass into bioethanol or other value-added compounds. Here, we describe the metabolic pathway that enables the marine flavobacterium Formosa agariphila to degrade ulvan, the main cell wall polysaccharide of bloom-forming Ulva species. The pathway involves 12 biochemically characterized carbohydrate-active enzymes, including two polysaccharide lyases, three sulfatases and seven glycoside hydrolases that sequentially break down ulvan into fermentable monosaccharides. This way, the enzymes turn a previously unexploited renewable into a valuable and ecologically sustainable bioresource.

Indexed as

Bacterial ProteinsCarbohydrate MetabolismFlavobacteriaceaeGene Expression Regulation, BacterialGene Expression Regulation, EnzymologicGenome, BacterialGenomicsModels, MolecularPolysaccharidesProtein ConformationSulfatasesBacterial ProteinsPolysaccharidesSulfatasesulvan

Identifiers

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.