Evidence map›Paper›PMID 31285595›Full record

ArticleNature chemical biology2019

Covalent targeting of the vacuolar H

Clive Yik-Sham Chung, Hijai R Shin, Charles A Berdan, Breanna Ford, Carl C Ward, James A Olzmann, Roberto Zoncu, Daniel K Nomura

Abstract read
In one paragraph

Article in Nature chemical biology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 110 papers.

0numbers the graph read from it
0cells of the map it votes in
110citing papers in PubMed
15.6field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

110 citing papers in PubMed, 181 citations in OpenAlex.

  1. Article
  2. Autophagy modulation in cancer.Nature reviews. Drug discovery · 2026
    Review
  3. Compartmental pH regulation in cancer and antitumor immunity: therapeutic opportunities and challenges.Apoptosis : an international journal on programmed cell death · 2026
    Review
  4. Review
  5. Article
  6. ATP13A2 restrains macrophage NLRP3 inflammasome activation to repress neurodegeneration via modulating mitochondrial homeostasis.Proceedings of the National Academy of Sciences of the United States of America · 2026
    Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Enhanced lysosomal activity prevents infection with PrPThe Journal of biological chemistry · 2026
    Article
  12. Review
  13. Review
  14. Article
  15. Review
  16. Article
  17. Review
  18. Article
  19. Article
  20. Review

50 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 1 institution in 1 country.

Clive Yik-Sham ChungDepartment of Chemistry, University of California, Berkeley, Berkeley, CA, USA.
Hijai R ShinDepartment of Molecular and Cell Biology, University of California, Berkeley, Berkeley, CA, USA.
Charles A BerdanDepartment of Nutritional Sciences and Toxicology, University of California, Berkeley, CA, USA.
Breanna FordDepartment of Nutritional Sciences and Toxicology, University of California, Berkeley, CA, USA.ORCID http://orcid.org/0000-0001-8277-9406
Carl C WardNovartis-Berkeley Center for Proteomics and Chemistry Technologies, Berkeley, CA, USA.
James A OlzmannDepartment of Nutritional Sciences and Toxicology, University of California, Berkeley, CA, USA.ORCID http://orcid.org/0000-0001-7751-8316
Roberto ZoncuDepartment of Molecular and Cell Biology, University of California, Berkeley, Berkeley, CA, USA. rzoncu@berkeley.edu.ORCID http://orcid.org/0000-0003-1611-1891
Daniel K NomuraDepartment of Chemistry, University of California, Berkeley, Berkeley, CA, USA. dnomura@berkeley.edu.ORCID http://orcid.org/0000-0003-1614-8360
University of California, Berkeley · US

Funding

Training CoreP42ES004705 · NIEHS · UNIVERSITY OF CALIFORNIA BERKELEY · PI MCHALE, CLIONA · 1987 to 2025
$74.6M
Harnessing E3 Ligases for Cancer TherapyR01CA240981 · NCI · UNIVERSITY OF CALIFORNIA BERKELEY · PI Daniel Nomura · 2019 to 2026
$4.3M
Chemical Probes to Study Formaldehyde BiologyR01ES028096 · NIEHS · UNIVERSITY OF CALIFORNIA BERKELEY · PI Christopher J. Chang · 2017 to 2026
$4.1M
Molecular Mechanisms of Lipid Droplet BiogenesisR01GM112948 · NIGMS · UNIVERSITY OF CALIFORNIA BERKELEY · PI OLZMANN, JAMES A · 2015 to 2024
$3.1M
ENGINEERING ORGANELLE FUNCTION TO REWIRE CANCER CELL METABOLISMDP2CA195761 · NCI · UNIVERSITY OF CALIFORNIA BERKELEY · PI ZONCU, ROBERTO · 2014 to 2014
$2.4M
Spatio-temporal regulation of mTORC1 signaling in normal and disease statesR01GM130995 · NIGMS · UNIVERSITY OF CALIFORNIA BERKELEY · PI ZONCU, ROBERTO · 2019 to 2022
$1.2M
Characterizing the Druggable Hotspots Targeted by Anti-Cancer Natural Product Withaferin AF31CA225173 · NCI · UNIVERSITY OF CALIFORNIA BERKELEY · PI WARD, CARL · 2018 to 2019
$52k
NCI NIH HHS DP2 CA195761NCI NIH HHS F31 CA225173NCI NIH HHS R01 CA240981NIEHS NIH HHS P42 ES004705NIEHS NIH HHS R01 ES028096NIGMS NIH HHS R01 GM112948NIGMS NIH HHS R01 GM130995
6 · The paper itself

Abstract

Autophagy is a lysosomal degradation pathway that eliminates aggregated proteins and damaged organelles to maintain cellular homeostasis. A major route for activating autophagy involves inhibition of the mTORC1 kinase, but current mTORC1-targeting compounds do not allow complete and selective mTORC1 blockade. Here, we have coupled screening of a covalent ligand library with activity-based protein profiling to discover EN6, a small-molecule in vivo activator of autophagy that covalently targets cysteine 277 in the ATP6V1A subunit of the lysosomal v-ATPase, which activates mTORC1 via the Rag guanosine triphosphatases. EN6-mediated ATP6V1A modification decouples the v-ATPase from the Rags, leading to inhibition of mTORC1 signaling, increased lysosomal acidification and activation of autophagy. Consistently, EN6 clears TDP-43 aggregates, a causative agent in frontotemporal dementia, in a lysosome-dependent manner. Our results provide insight into how the v-ATPase regulates mTORC1, and reveal a unique approach for enhancing cellular clearance based on covalent inhibition of lysosomal mTORC1 signaling.

Indexed as

AnimalsAutophagyCell LineGene Expression RegulationGene Knockdown TechniquesHumansMechanistic Target of Rapamycin Complex 1MiceMolecular StructureProto-Oncogene Proteins c-aktPyrazolesVacuolar Proton-Translocating ATPasesautophagy activator EN6Mechanistic Target of Rapamycin Complex 1Proto-Oncogene Proteins c-aktPyrazolesVacuolar Proton-Translocating ATPases

Identifiers

PMID31285595
PMCPMC6641988
OpenAlexW2957848130

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.