Evidence map›Paper›PMID 31285581›Full record

ArticleNature biomedical engineering2019

Matrix stiffness induces a tumorigenic phenotype in mammary epithelium through changes in chromatin accessibility.

Ryan S Stowers, Anna Shcherbina, Johnny Israeli, Joshua J Gruber, Julie Chang, Sungmin Nam, Atefeh Rabiee, Mary N Teruel, Michael P Snyder, Anshul Kundaje and 1 more

Abstract read
In one paragraph

Article in Nature biomedical engineering, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 131 papers.

0numbers the graph read from it
0cells of the map it votes in
131citing papers in PubMed
10.6field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

131 citing papers in PubMed, 221 citations in OpenAlex.

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  7. [Mechanobiology of peripheral nerve development: mechanical properties, sensing, and response].Zhongguo xiu fu chong jian wai ke za zhi = Zhongguo xiufu chongjian waike zazhi = Chinese journal of reparative and reconstructive surgery · 2026
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71 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

11 authors at 1 institution in 1 country.

Ryan S StowersDepartment of Mechanical Engineering, Stanford University, Stanford, CA, USA.
Anna ShcherbinaDepartment of Biological Data Science, Stanford University, Stanford, CA, USA.
Johnny IsraeliDepartment of Genetics, Stanford University, Stanford, CA, USA.
Joshua J GruberDepartment of Genetics, Stanford University, Stanford, CA, USA.
Julie ChangDepartment of Bioengineering, Stanford University, Stanford, CA, USA.ORCID http://orcid.org/0000-0002-8433-5902
Sungmin NamDepartment of Mechanical Engineering, Stanford University, Stanford, CA, USA.ORCID http://orcid.org/0000-0003-1016-3738
Atefeh RabieeDepartment of Chemical and Systems Biology, Stanford University, Stanford, CA, USA.
Mary N TeruelDepartment of Chemical and Systems Biology, Stanford University, Stanford, CA, USA.ORCID http://orcid.org/0000-0002-2854-3598
Michael P SnyderDepartment of Genetics, Stanford University, Stanford, CA, USA.
Anshul KundajeDepartment of Genetics, Stanford University, Stanford, CA, USA.ORCID http://orcid.org/0000-0003-3084-2287
Ovijit ChaudhuriDepartment of Mechanical Engineering, Stanford University, Stanford, CA, USA. chaudhuri@stanford.edu.ORCID http://orcid.org/0000-0002-9287-3401
Stanford University · US

Funding

POSTDOCTORAL TRAINING IN MEDICAL INFORMATION SCIENCEST15LM007033 · NLM · STANFORD UNIVERSITY · PI SYLVIA KATINA PLEVRITIS · 1985 to 2026
$25.5M
Critical Role for Microvasculature in Airway TransplantationR01HL095686 · NHLBI · PALO ALTO VETERANS INSTIT FOR RESEARCH · PI NICOLLS, MARK ROBERT · 2010 to 2022
$4.7M
Integrative Omics as a Discovery Tool for Pulmonary HypertensionR01HL122887 · NHLBI · STANFORD UNIVERSITY · PI NICOLLS, MARK ROBERT, RABINOVITCH, MARLENE · 2015 to 2018
$4.1M
Role of extracellular matrix malleability in mediating breast cancer cell invasion and migrationR37CA214136 · NCI · STANFORD UNIVERSITY · PI CHAUDHURI, OVIJIT · 2018 to 2024
$2.5M
Controlling tissue size by noise and feedbackR01DK106241 · NIDDK · WEILL MEDICAL COLL OF CORNELL UNIV · PI TERUEL, MARY N · 2015 to 2018
$1.4M
Controlling the rate of adipocyte differentiation: Experiments and theoryR01DK101743 · NIDDK · WEILL MEDICAL COLL OF CORNELL UNIV · PI TERUEL, MARY N · 2015 to 2017
$1.1M
High-throughput sequencer for multi-scale genomic studiesS10OD020141 · OD · STANFORD UNIVERSITY · PI SNYDER, MICHAEL P. · 2015 to 2015
$600k
Transmission Electron MicroscopeS10RR026780 · NCRR · STANFORD UNIVERSITY · PI TALBOT, WILLIAM S · 2010 to 2010
$412k
Effects of Microenvironmental Stiffness on Epigenetic RegulationF32CA210431 · NCI · STANFORD UNIVERSITY · PI STOWERS, RYAN · 2017 to 2019
$142k
NCI NIH HHS F32 CA210431NCI NIH HHS R37 CA214136NCRR NIH HHS S10 RR026780NHLBI NIH HHS R01 HL095686NHLBI NIH HHS R01 HL122887NIDDK NIH HHS R01 DK101743NIDDK NIH HHS R01 DK106241NIH HHS S10 OD020141NLM NIH HHS T15 LM007033
6 · The paper itself

Abstract

In breast cancer, the increased stiffness of the extracellular matrix is a key driver of malignancy. Yet little is known about the epigenomic changes that underlie the tumorigenic impact of extracellular matrix mechanics. Here, we show in a three-dimensional culture model of breast cancer that stiff extracellular matrix induces a tumorigenic phenotype through changes in chromatin state. We found that increased stiffness yielded cells with more wrinkled nuclei and with increased lamina-associated chromatin, that cells cultured in stiff matrices displayed more accessible chromatin sites, which exhibited footprints of Sp1 binding, and that this transcription factor acts along with the histone deacetylases 3 and 8 to regulate the induction of stiffness-mediated tumorigenicity. Just as cell culture on soft environments or in them rather than on tissue-culture plastic better recapitulates the acinar morphology observed in mammary epithelium in vivo, mammary epithelial cells cultured on soft microenvironments or in them also more closely replicate the in vivo chromatin state. Our results emphasize the importance of culture conditions for epigenomic studies, and reveal that chromatin state is a critical mediator of mechanotransduction.

Indexed as

Breast NeoplasmsChromatinEpitheliumPhenotypeCell Culture TechniquesCell Line, TumorEpithelial CellsExtracellular MatrixFemaleHumansMechanotransduction, CellularSp1 Transcription FactorTranscription FactorsTumor MicroenvironmentChromatinSP1 protein, humanSp1 Transcription FactorTranscription Factors

Identifiers

PMID31285581
PMCPMC6899165
OpenAlexW2957594695

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.