Evidence map›Paper›PMID 31285449›Full record

ArticleScientific reports2019

The AMPK system of salmonid fishes was expanded through genome duplication and is regulated by growth and immune status in muscle.

Dwight R Causey, Jin-Hyoung Kim, Robert H Devlin, Samuel A M Martin, Daniel J Macqueen

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
1.1field-weighted citation impact, top 23% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 16 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Review
  6. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 3 countries.

Dwight R CauseySchool of Biological Sciences, University of Aberdeen, Aberdeen, UK.ORCID http://orcid.org/0000-0002-4383-4123
Jin-Hyoung KimFisheries and Oceans Canada, West Vancouver, British Columbia, V7V 1N6, Canada.
Robert H DevlinFisheries and Oceans Canada, West Vancouver, British Columbia, V7V 1N6, Canada.
Samuel A M MartinSchool of Biological Sciences, University of Aberdeen, Aberdeen, UK.
Daniel J MacqueenSchool of Biological Sciences, University of Aberdeen, Aberdeen, UK. daniel.macqueen@roslin.ed.ac.uk.
Fisheries and Oceans Canada · CAUniversity of Aberdeen · GBRoslin Institute · GB

Funding

Biotechnology and Biological Sciences Research Council BBS/E/D/10002070
6 · The paper itself

Abstract

5'adenosine monophosphate-activated protein kinase (AMPK) is a master regulator of energy homeostasis in eukaryotes. This study identified expansions in the AMPK-α, -β and -γ families of salmonid fishes due to a history of genome duplication events, including five novel salmonid-specific AMPK subunit gene paralogue pairs. We tested the hypothesis that the expanded AMPK gene system of salmonids is transcriptionally regulated by growth and immunological status. As a model, we studied immune-stimulated coho salmon (Oncorhynchus kisutch) from three experiment groups sharing the same genetic background, but showing highly-divergent growth rates and nutritional status. Specifically, we compared wild-type and GH-transgenic fish, the latter achieving either enhanced or wild-type growth rate via ration manipulation. Transcript levels for the fifteen unique salmonid AMPK subunit genes were quantified in skeletal muscle after stimulation with bacterial or viral mimics to alter immune status. These analyses revealed a constitutive up-regulation of several AMPK-α and -γ subunit-encoding genes in GH-transgenic fish achieving accelerated growth. Further, immune stimulation caused a decrease in the expression of several AMPK subunit-encoding genes in GH-transgenic fish specifically. The dynamic expression responses observed suggest a role for the AMPK system in balancing energetic investment into muscle growth according to immunological status in salmonid fishes.

Indexed as

AMP-Activated Protein KinasesAnimal Nutritional Physiological PhenomenaAnimalsAnimals, Genetically ModifiedEvolution, MolecularFish ProteinsGene DuplicationGrowth HormoneHomeostasisMuscle, SkeletalNutritional StatusOncorhynchus kisutchPhylogenySpecies SpecificityAMP-Activated Protein KinasesFish ProteinsGrowth Hormone

Identifiers

PMID31285449
PMCPMC6614447
OpenAlexW2957899377

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.