Evidence map›Paper›PMID 31285370›Full record

ArticleClinical cancer research : an official journal of the American Association for Cancer Research2019

BAP1 Loss Is Associated with DNA Methylomic Repatterning in Highly Aggressive Class 2 Uveal Melanomas.

Matthew G Field, Jeffim N Kuznetsov, Parker L Bussies, Louie Z Cai, Karam A Alawa, Christina L Decatur, Stefan Kurtenbach, J William Harbour

Abstract read
In one paragraph

Article in Clinical cancer research : an official journal of the American Association for Cancer Research, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 32 papers.

0numbers the graph read from it
0cells of the map it votes in
32citing papers in PubMed
9.4field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

32 citing papers in PubMed, 63 citations in OpenAlex.

  1. Pointmaps to Practice: 3D Multi-view Ocular Lesion Mapping.Journal of imaging informatics in medicine · 2026
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  10. Molecular Analysis of Murine KitJID innovations : skin science from molecules to population health · 2024
    Article
  11. Machine Learning Methods for Gene Selection in Uveal Melanoma.International journal of molecular sciences · 2024
    Article
  12. Article
  13. Review
  14. Article
  15. NSUN2-mediated RNA mEpigenetics · 2022
    Article
  16. Cancers · 2022
    Article
  17. Article
  18. Article
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 1 institution in 2 countries.

Matthew G FieldBascom Palmer Eye Institute, Sylvester Comprehensive Cancer Center and Interdisciplinary Stem Cell Institute, University of Miami Miller School of Medicine, Miami, Florida.
Jeffim N KuznetsovBascom Palmer Eye Institute, Sylvester Comprehensive Cancer Center and Interdisciplinary Stem Cell Institute, University of Miami Miller School of Medicine, Miami, Florida.
Parker L BussiesBascom Palmer Eye Institute, Sylvester Comprehensive Cancer Center and Interdisciplinary Stem Cell Institute, University of Miami Miller School of Medicine, Miami, Florida.
Louie Z CaiBascom Palmer Eye Institute, Sylvester Comprehensive Cancer Center and Interdisciplinary Stem Cell Institute, University of Miami Miller School of Medicine, Miami, Florida.
Karam A AlawaBascom Palmer Eye Institute, Sylvester Comprehensive Cancer Center and Interdisciplinary Stem Cell Institute, University of Miami Miller School of Medicine, Miami, Florida.
Christina L DecaturBascom Palmer Eye Institute, Sylvester Comprehensive Cancer Center and Interdisciplinary Stem Cell Institute, University of Miami Miller School of Medicine, Miami, Florida.ORCID 0000-0001-9125-1718
Stefan KurtenbachBascom Palmer Eye Institute, Sylvester Comprehensive Cancer Center and Interdisciplinary Stem Cell Institute, University of Miami Miller School of Medicine, Miami, Florida.ORCID 0000-0002-7445-596X
J William HarbourBascom Palmer Eye Institute, Sylvester Comprehensive Cancer Center and Interdisciplinary Stem Cell Institute, University of Miami Miller School of Medicine, Miami, Florida. harbour@miami.edu.ORCID 0000-0002-1104-9809
Stem Cell Institute · PA

Funding

Tumor Biology Research ProgramP30CA240139 · NCI · UNIVERSITY OF MIAMI SCHOOL OF MEDICINE · PI George S. Grills · 2019 to 2026
$24.1M
Shared Equipment ModuleP30EY014801 · NEI · UNIVERSITY OF MIAMI SCHOOL OF MEDICINE · PI Dmitry V Ivanov · 2004 to 2026
$12.2M
MOLECULAR PREDICTIVE TESTING IN OCULAR MELANOMAR01CA125970 · NCI · WASHINGTON UNIVERSITY · PI CORREA, ZELIA MARIA, HARBOUR, JAMES WILLIAM · 2006 to 2021
$4.9M
The role of PRAME in promoting metastasis in uveal melanomaF30CA206430 · NCI · UNIVERSITY OF MIAMI SCHOOL OF MEDICINE · PI FIELD, MATTHEW GARRETT · 2016 to 2018
$147k
NCI NIH HHS F30 CA206430NCI NIH HHS P30 CA240139NCI NIH HHS R01 CA125970NEI NIH HHS P30 EY014801
6 · The paper itself

Abstract

purposeThe strong association between

resultsHypermethylation on chromosome 3 correlated with downregulated gene expression at several loci, including 3p21, where

conclusionsThis study, coupled with previous work, suggests that the initial event in the divergence of Class 2 UM from Class 1 UM is loss of one copy of chromosome 3, followed by mutation of

Indexed as

DNA MethylationGene SilencingChromosome MappingComputational BiologyDatabases, Nucleic AcidDisease ProgressionDNA Mutational AnalysisEpigenesis, GeneticEpigenomeGene Expression ProfilingGene Knockdown TechniquesHumansMelanomaMutationNeoplasm GradingTumor Suppressor ProteinsBAP1 protein, humanTumor Suppressor ProteinsUbiquitin Thiolesterase

Identifiers

PMID31285370
PMCPMC6744995
OpenAlexW2961677003

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.