Evidence map›Paper›PMID 31284384›Full record

ArticleLife (Basel, Switzerland)2019

The Role of Orthogonality in Genetic Code Expansion.

Pol Arranz-Gibert, Jaymin R Patel, Farren J Isaacs

Abstract read
In one paragraph

Article in Life (Basel, Switzerland), 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed.

  1. Review
  2. Review
  3. Article
  4. A Methodology for the Assessment and Prioritization of Genetic Biocontainment Technologies for Engineered Microbes.Applied biosafety : journal of the American Biological Safety Association · 2024
    Article
  5. Article
  6. Review
  7. Investigation of Genome Biology by Synthetic Genome Engineering.Bioengineering (Basel, Switzerland) · 2023
    Review
  8. Article
  9. Review
  10. Article
  11. Article
  12. Review
  13. Rational Design of Aptamer-Tagged tRNAs.International journal of molecular sciences · 2020
    Article
  14. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Pol Arranz-GibertDepartment of Molecular, Cellular, and Developmental Biology, Yale University, New Haven, CT 06520, USA.
Jaymin R PatelDepartment of Molecular, Cellular, and Developmental Biology, Yale University, New Haven, CT 06520, USA.
Farren J IsaacsDepartment of Molecular, Cellular, and Developmental Biology, Yale University, New Haven, CT 06520, USA. farren.isaacs@yale.edu.ORCID 0000-0001-8615-8236

Funding

Expanding the genetic code with phosphotyrosine and phosphothreonineR01GM125951 · NIGMS · YALE UNIVERSITY · PI ISAACS, FARREN J., RINEHART, JESSE · 2018 to 2021
$1.2M
NIGMS NIH HHS R01 GM125951NIH HHS 1R01GM117230-01NIH HHS 1R01GM125951-01
6 · The paper itself

Abstract

The genetic code defines how information in the genome is translated into protein. Aside from a handful of isolated exceptions, this code is universal. Researchers have developed techniques to artificially expand the genetic code, repurposing codons and translational machinery to incorporate nonstandard amino acids (nsAAs) into proteins. A key challenge for robust genetic code expansion is orthogonality; the engineered machinery used to introduce nsAAs into proteins must co-exist with native translation and gene expression without cross-reactivity or pleiotropy. The issue of orthogonality manifests at several levels, including those of codons, ribosomes, aminoacyl-tRNA synthetases, tRNAs, and elongation factors. In this concept paper, we describe advances in genome recoding, translational engineering and associated challenges rooted in establishing orthogonality needed to expand the genetic code.

Indexed as

genetic code expansiongenome recodingnonstandard amino acidsorthogonalityprotein engineeringribosome engineeringtranslation

Identifiers

PMID31284384
PMCPMC6789853

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.