Evidence map›Paper›PMID 31283754›Full record

ArticlePLoS genetics2019

The demethylase NMAD-1 regulates DNA replication and repair in the Caenorhabditis elegans germline.

Simon Yuan Wang, Hui Mao, Hiroki Shibuya, Satoru Uzawa, Zach Klapholz O'Brown, Sage Wesenberg, Nara Shin, Takamune T Saito, Jinmin Gao, Barbara J Meyer and 2 more

Open access · goldAbstract read
In one paragraph

Article in PLoS genetics, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
0.8field-weighted citation impact, top 29% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 24 citations in OpenAlex.

  1. Article
  2. N6-methyladenine DNA modification modulates pathogen virulence in nematodes.Proceedings of the National Academy of Sciences of the United States of America · 2026
    Article
  3. Analysis ofComputational and structural biotechnology journal · 2024
    Article
  4. Structural Basis of Nucleic Acid Recognition and 6mA Demethylation byInternational journal of molecular sciences · 2024
    Article
  5. Article
  6. Emerging Roles for DNA 6mA and RNA m6A Methylation in Mammalian Genome.International journal of molecular sciences · 2023
    Review
  7. Article
  8. Article
  9. Mammalian DNA NMolecular cell · 2023
    Review
  10. Review
  11. N6-methyladenine: A Rare and Dynamic DNA Mark.Advances in experimental medicine and biology · 2022
    Article
  12. Article
  13. Article
  14. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 3 institutions in 1 country.

Simon Yuan WangDivision of Newborn Medicine, Children's Hospital Boston, Boston, Massachusetts, United States of America.ORCID 0000-0002-9089-2617
Hui MaoDivision of Newborn Medicine, Children's Hospital Boston, Boston, Massachusetts, United States of America.ORCID 0000-0001-5640-1952
Hiroki ShibuyaDivision of Newborn Medicine, Children's Hospital Boston, Boston, Massachusetts, United States of America.ORCID 0000-0002-3400-0741
Satoru UzawaHoward Hughes Medical Institute and Department of Molecular and Cell Biology, University of California, Berkeley, Berkeley, California, United States of America.ORCID 0000-0002-2753-5182
Zach Klapholz O'BrownDivision of Newborn Medicine, Children's Hospital Boston, Boston, Massachusetts, United States of America.
Sage WesenbergDivision of Newborn Medicine, Children's Hospital Boston, Boston, Massachusetts, United States of America.
Nara ShinDepartment of Genetics, Harvard Medical School, Boston, Massachusetts, United States of America.ORCID 0000-0002-9910-4971
Takamune T SaitoDepartment of Genetics, Harvard Medical School, Boston, Massachusetts, United States of America.
Jinmin GaoDepartment of Genetics, Harvard Medical School, Boston, Massachusetts, United States of America.
Barbara J MeyerHoward Hughes Medical Institute and Department of Molecular and Cell Biology, University of California, Berkeley, Berkeley, California, United States of America.
Monica P ColaiácovoDepartment of Genetics, Harvard Medical School, Boston, Massachusetts, United States of America.ORCID 0000-0001-7803-4372
Eric Lieberman GreerDivision of Newborn Medicine, Children's Hospital Boston, Boston, Massachusetts, United States of America.ORCID 0000-0002-7501-7371
Boston Children's Hospital · USHarvard University · USHoward Hughes Medical Institute · US

Funding

Synaptonemal Complex Assembly and Function in MeiosisR01GM072551 · NIGMS · HARVARD UNIVERSITY (MEDICAL SCHOOL) · PI Monica P Colaiacovo · 2005 to 2026
$7.5M
Characterization of DNA N6-methyl adenine and its role in epigenetic memoryDP2AG055947 · NIA · BOSTON CHILDREN'S HOSPITAL · PI GREER, ERIC LIEBERMAN · 2016 to 2021
$3.2M
Molecular mechanisms of germline DNA repair and DNA damage responseR01GM105853 · NIGMS · HARVARD MEDICAL SCHOOL · PI COLAIACOVO, MONICA P · 2014 to 2017
$1.3M
Identifying the molecular mechanisms of transgenerational epigenetic inheritanceR00AG043550 · NIA · BOSTON CHILDREN'S HOSPITAL · PI GREER, ERIC LIEBERMAN · 2015 to 2017
$737k
Howard Hughes Medical InstituteNIA NIH HHS DP2 AG055947NIA NIH HHS R00 AG043550NIGMS NIH HHS R01 GM072551NIGMS NIH HHS R01 GM105853
6 · The paper itself

Abstract

The biological roles of nucleic acid methylation, other than at the C5-position of cytosines in CpG dinucleotides, are still not well understood. Here, we report genetic evidence for a critical role for the putative DNA demethylase NMAD-1 in regulating meiosis in C. elegans. nmad-1 mutants have reduced fertility. They show defects in prophase I of meiosis, which leads to reduced embryo production and an increased incidence of males due to defective chromosomal segregation. In nmad-1 mutant worms, nuclear staging beginning at the leptotene and zygotene stages is disorganized, the cohesin complex is mislocalized at the diplotene and diakinesis stages, and chromosomes are improperly condensed, fused, or lost by the end of diakinesis. RNA sequencing of the nmad-1 germline revealed reduced induction of DNA replication and DNA damage response genes during meiosis, which was coupled with delayed DNA replication, impaired DNA repair and increased apoptosis of maturing oocytes. To begin to understand how NMAD-1 regulates DNA replication and repair, we used immunoprecipitation and mass spectrometry to identify NMAD-1 binding proteins. NMAD-1 binds to multiple proteins that regulate DNA repair and replication, including topoisomerase TOP-2 and co-localizes with TOP-2 on chromatin. Moreover, the majority of TOP-2 binding to chromatin depends on NMAD-1. These results suggest that NMAD-1 functions at DNA replication sites to regulate DNA replication and repair during meiosis.

Indexed as

DNA RepairDNA ReplicationAnimalsCaenorhabditis elegansCaenorhabditis elegans ProteinsChromosome SegregationDioxygenasesMaleMeiosisMutationOxidoreductases, N-DemethylatingSequence Analysis, RNACaenorhabditis elegans ProteinsDioxygenasesnmad-1 protein, C elegansOxidoreductases, N-Demethylating

Identifiers

PMID31283754
PMCPMC6638966
OpenAlexW2962476027

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.