Evidence map›Paper›PMID 31282868›Full record

ArticleActa crystallographica. Section F, Structural biology communications2019

Structural characterization of Treponema pallidum Tp0225 reveals an unexpected leucine-rich repeat architecture.

Raghavendran Ramaswamy, Simon Houston, Bianca Loveless, Caroline E Cameron, Martin J Boulanger

Open access · bronzeAbstract read
In one paragraph

Article in Acta crystallographica. Section F, Structural biology communications, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.3field-weighted citation impact, top 40% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 6 citations in OpenAlex.

  1. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Raghavendran RamaswamyDepartment of Biochemistry and Microbiology, University of Victoria, Victoria, BC V8P 5C2, Canada.
Simon HoustonDepartment of Biochemistry and Microbiology, University of Victoria, Victoria, BC V8P 5C2, Canada.
Bianca LovelessDepartment of Biochemistry and Microbiology, University of Victoria, Victoria, BC V8P 5C2, Canada.
Caroline E CameronDepartment of Biochemistry and Microbiology, University of Victoria, Victoria, BC V8P 5C2, Canada.
Martin J BoulangerDepartment of Biochemistry and Microbiology, University of Victoria, Victoria, BC V8P 5C2, Canada.
University of Victoria · CA

Funding

Extracellular Matrix Adhesins of Treponema pallidumR01AI051334 · NIAID · UNIVERSITY OF WASHINGTON · PI CAMERON, CAROLINE E · 2002 to 2017
$3.4M
Extracellular Matrix Adhesins of Treponema pallidumR37AI051334 · NIAID · UNIVERSITY OF VICTORIA · PI CAROLINE E CAMERON · 2019 to 2026
$2.3M
Canadian Institutes of Health Research, Institute of Infection and Immunity MOP82915Natural Sciences and Engineering Research Council of Canada 327186NIAID NIH HHS R01 AI051334NIAID NIH HHS R37 AI051334NIH HHS AI-051334
6 · The paper itself

Abstract

The phylogenetically divergent spirochete bacterium Treponema pallidum subsp. pallidum is the causative agent of syphilis. Central to the capacity of T. pallidum to establish infection is the ability of the pathogen to attach to a diversity of host cells. Many pathogenic bacteria employ leucine-rich repeat (LRR) domain-containing proteins to mediate protein-protein interactions, including attachment to host components and establishment of infection. Intriguingly, T. pallidum expresses only one putative LRR domain-containing protein (Tp0225) with an unknown function. In an effort to ascribe a function to Tp0225, a comprehensive phylogenetic analysis was first performed; this investigation revealed that Tp0225 clusters with the pathogenic clade of treponemes. Its crystal structure was then determined to 2.0 Å resolution using Pt SAD phasing, which revealed a noncanonical architecture containing a hexameric LRR core with a discontinuous β-sheet bridged by solvent molecules. Furthermore, a surface-exposed, hydrophobic pocket, which was found in Tp0225 but is largely absent in canonical LRR domains from other pathogenic bacteria, may serve to coordinate a hydrophobic ligand. Overall, this study provides the first structural characterization of the sole LRR domain-containing protein from T. pallidum and offers insight into the unique molecular landscape of this important human pathogen.

Indexed as

Bacterial ProteinsBinding SitesCrystallography, X-RayHydrophobic and Hydrophilic InteractionsLeucine-Rich Repeat ProteinsPhylogenyProtein DomainsProteinsProtein Structure, SecondaryTreponema pallidumBacterial ProteinsLeucine-Rich Repeat ProteinsProteinsleucine rich-repeat domainsyphilisTreponema pallidumX-ray crystallography

Identifiers

PMID31282868
PMCPMC6613448
OpenAlexW2955409178

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.