Evidence map›Paper›PMID 31281883›Full record

ArticleScience advances2019

A heritable subset of the core rumen microbiome dictates dairy cow productivity and emissions.

R John Wallace, Goor Sasson, Philip C Garnsworthy, Ilma Tapio, Emma Gregson, Paolo Bani, Pekka Huhtanen, Ali R Bayat, Francesco Strozzi, Filippo Biscarini and 23 more

Abstract read
In one paragraph

Article in Science advances, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 207 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
207citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

207 citing papers in PubMed, 1 synthesis or guideline pooled it.

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147 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

33 authors.

R John WallaceThe Rowett Institute, University of Aberdeen, Ashgrove Road West, Aberdeen AB25 2ZD, UK.ORCID 0000-0003-2691-1585
Goor SassonDepartment of Life Sciences and the National Institute for Biotechnology in the Negev, Ben-Gurion University of the Negev, Be'er Sheva, Israel.
Philip C GarnsworthyUniversity of Nottingham, School of Biosciences, Sutton Bonington Campus, Loughborough LE12 5RD, UK.ORCID 0000-0001-5131-3398
Ilma TapioProduction Systems, Natural Resources Institute Finland (Luke), 31600 Jokioinen, Finland.ORCID 0000-0002-0752-9551
Emma GregsonUniversity of Nottingham, School of Biosciences, Sutton Bonington Campus, Loughborough LE12 5RD, UK.
Paolo BaniDepartment of Animal Science, Food and Nutrition-DIANA, Università Cattolica del Sacro Cuore, 29122 Piacenza, Italy.ORCID 0000-0002-5334-1015
Pekka HuhtanenSwedish University of Agricultural Sciences, Department of Agriculture for Northern Sweden, S-90 183 Umeå, Sweden.ORCID 0000-0001-7855-7448
Ali R BayatProduction Systems, Natural Resources Institute Finland (Luke), 31600 Jokioinen, Finland.ORCID 0000-0002-4894-0662
Francesco StrozziParco Tecnologico Padano, Via Einstein, 26900 Lodi, Italy.
Filippo BiscariniParco Tecnologico Padano, Via Einstein, 26900 Lodi, Italy.ORCID 0000-0002-3901-2354
Timothy J SnellingThe Rowett Institute, University of Aberdeen, Ashgrove Road West, Aberdeen AB25 2ZD, UK.ORCID 0000-0002-8952-8826
Neil SaundersUniversity of Nottingham, School of Biosciences, Sutton Bonington Campus, Loughborough LE12 5RD, UK.ORCID 0000-0003-2692-6656
Sarah L PottertonUniversity of Nottingham, School of Biosciences, Sutton Bonington Campus, Loughborough LE12 5RD, UK.
James CraigonUniversity of Nottingham, School of Biosciences, Sutton Bonington Campus, Loughborough LE12 5RD, UK.ORCID 0000-0003-4570-5138
Andrea MinutiDepartment of Animal Science, Food and Nutrition-DIANA, Università Cattolica del Sacro Cuore, 29122 Piacenza, Italy.ORCID 0000-0002-0617-6571
Erminio TrevisiDepartment of Animal Science, Food and Nutrition-DIANA, Università Cattolica del Sacro Cuore, 29122 Piacenza, Italy.ORCID 0000-0003-1644-1911
Maria L CallegariInstitute of Microbiology, Università Cattolica del Sacro Cuore, 29122 Piacenza, Italy.ORCID 0000-0002-7811-5305
Fiorenzo Piccioli CappelliDepartment of Animal Science, Food and Nutrition-DIANA, Università Cattolica del Sacro Cuore, 29122 Piacenza, Italy.ORCID 0000-0003-1277-7821
Edward H Cabezas-GarciaSwedish University of Agricultural Sciences, Department of Agriculture for Northern Sweden, S-90 183 Umeå, Sweden.
Johanna VilkkiProduction Systems, Natural Resources Institute Finland (Luke), 31600 Jokioinen, Finland.ORCID 0000-0002-7480-842X
Cesar Pinares-PatinoProduction Systems, Natural Resources Institute Finland (Luke), 31600 Jokioinen, Finland.
Kateřina O FliegerováInstitute of Animal Physiology and Genetics, CAS, v.v.i., Vídeňská 1083, Prague 14220, Czech Republic.ORCID 0000-0001-9439-8168
Jakub MrázekInstitute of Animal Physiology and Genetics, CAS, v.v.i., Vídeňská 1083, Prague 14220, Czech Republic.ORCID 0000-0003-1907-3333
Hana SechovcováInstitute of Animal Physiology and Genetics, CAS, v.v.i., Vídeňská 1083, Prague 14220, Czech Republic.ORCID 0000-0002-8481-3038
Jan KopečnýInstitute of Animal Physiology and Genetics, CAS, v.v.i., Vídeňská 1083, Prague 14220, Czech Republic.ORCID 0000-0002-2428-2511
Aurélie BoninLaboratoire d'Ecologie Alpine, Domaine Universitaire de St Martin d'Hères CNRS, 38041 Grenoble, France.ORCID 0000-0001-7800-8609
Frédéric BoyerLaboratoire d'Ecologie Alpine, Domaine Universitaire de St Martin d'Hères CNRS, 38041 Grenoble, France.ORCID 0000-0003-0021-9590
Pierre TaberletLaboratoire d'Ecologie Alpine, Domaine Universitaire de St Martin d'Hères CNRS, 38041 Grenoble, France.ORCID 0000-0002-3554-5954
Fotini KokouDepartment of Life Sciences and the National Institute for Biotechnology in the Negev, Ben-Gurion University of the Negev, Be'er Sheva, Israel.ORCID 0000-0002-3675-3835
Eran HalperinDepartments of Computer Science, Computational Medicine, Human Genetics, and Anesthesiology, University of California, Los Angeles, Los Angeles, CA 90095, USA.
John L WilliamsParco Tecnologico Padano, Via Einstein, 26900 Lodi, Italy.ORCID 0000-0001-5188-7957
Kevin J ShingfieldProduction Systems, Natural Resources Institute Finland (Luke), 31600 Jokioinen, Finland.
Itzhak MizrahiDepartment of Life Sciences and the National Institute for Biotechnology in the Negev, Ben-Gurion University of the Negev, Be'er Sheva, Israel.ORCID 0000-0001-6636-8818

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

A 1000-cow study across four European countries was undertaken to understand to what extent ruminant microbiomes can be controlled by the host animal and to identify characteristics of the host rumen microbiome axis that determine productivity and methane emissions. A core rumen microbiome, phylogenetically linked and with a preserved hierarchical structure, was identified. A 39-member subset of the core formed hubs in co-occurrence networks linking microbiome structure to host genetics and phenotype (methane emissions, rumen and blood metabolites, and milk production efficiency). These phenotypes can be predicted from the core microbiome using machine learning algorithms. The heritable core microbes, therefore, present primary targets for rumen manipulation toward sustainable and environmentally friendly agriculture.

Indexed as

AnimalsBloodCattleCohort StudiesFemaleGastrointestinal MicrobiomeMethaneMilkPhenotypePhylogenyRumenMethane

Identifiers

PMID31281883
PMCPMC6609165

What OpenQuestion holds

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LicenceCC BY-NC
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.