Evidence map›Paper›PMID 31280454›Full record

ArticleJournal of biomolecular NMR2019

Accelerating 2D NMR relaxation dispersion experiments using iterated maps.

Jared Rovny, Robert L Blum, J Patrick Loria, Sean E Barrett

Abstract read
In one paragraph

Article in Journal of biomolecular NMR, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Evaluating metrics of spectral quality in nonuniform sampling.Journal of magnetic resonance open · 2025
    Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Jared RovnyDepartment of Physics, Yale University, 217 Prospect St., New Haven, CT, 06511, USA.ORCID http://orcid.org/0000-0002-5547-0128
Robert L BlumDepartment of Physics, Yale University, 217 Prospect St., New Haven, CT, 06511, USA.ORCID http://orcid.org/0000-0002-9205-9960
J Patrick LoriaDepartment of Chemistry, Yale University, 225 Prospect St., New Haven, CT, 06511, USA.ORCID http://orcid.org/0000-0002-4824-9089
Sean E BarrettDepartment of Physics, Yale University, 217 Prospect St., New Haven, CT, 06511, USA. sean.barrett@yale.edu.ORCID http://orcid.org/0000-0002-0498-2027

Funding

Mechanism of catalytic regulation and active site loop motions in related protein tyrosine phosphatasesR01GM112781 · NIGMS · YALE UNIVERSITY · PI LORIA, JOSEPH P · 2015 to 2024
$2.8M
Division of Graduate Education 1122492Division of Materials Research 1310274Division of Materials Research 1610313Division of Molecular and Cellular Biosciences 1615415NIGMS NIH HHS 112781NIGMS NIH HHS R01 GM112781
6 · The paper itself

Abstract

NMR relaxation dispersion experiments play a central role in exploring molecular motion over an important range of timescales, and are an example of a broader class of multidimensional NMR experiments that probe important biomolecules. However, resolving the spectral features of these experiments using the Fourier transform requires sampling the full Nyquist grid of data, making these experiments very costly in time. Practitioners often reduce the experiment time by omitting 1D experiments in the indirectly observed dimensions, and reconstructing the spectra using one of a variety of post-processing algorithms. In prior work, we described a fast, Fourier-based reconstruction method using iterated maps according to the Difference Map algorithm of Veit Elser (DiffMap). Here we describe coDiffMap, a new reconstruction method that is based on DiffMap, but which exploits the strong correlations between 2D data slices in a pseudo-3D experiment. We apply coDiffMap to reconstruct dispersion curves from an [Formula: see text] relaxation dispersion experiment, and demonstrate that the method provides fast reconstructions and accurate relaxation curves down to very low numbers of sparsely-sampled data points.

Indexed as

Fourier AnalysisMolecular Dynamics SimulationAlgorithmsImage Processing, Computer-AssistedNuclear Magnetic Resonance, BiomolecularTime FactorscoDiffMapDifference mapDiffMapNonuniform samplingReconstructionSparse sampling

Identifiers

PMID31280454
PMCPMC7370911

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.