Evidence map›Paper›PMID 31280329›Full record

ArticlePlanta2019

Transcriptional network regulation of the brassinosteroid signaling pathway by the BES1-TPL-HDA19 co-repressor complex.

Hyemin Kim, Donghwan Shim, Suyun Moon, Jinsu Lee, Wonsil Bae, Hyunmo Choi, Kyunghwan Kim, Hojin Ryu

Abstract read
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In one paragraph

Article in Planta, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed.

  1. Article
  2. Article
  3. Integrating physiological and multi-omics methods to elucidate heat stress tolerance for sustainable rice production.Physiology and molecular biology of plants : an international journal of functional plant biology · 2024
    Review
  4. Wheat Transcriptional Corepressor TaTPR1 Suppresses Susceptibility GenesInternational journal of molecular sciences · 2024
    Article
  5. Article
  6. Review
  7. Article
  8. TOPLESS in the regulation of plant immunity.Plant molecular biology · 2022
    Review
  9. Article
  10. Article
  11. Article
  12. Review
  13. Review
  14. Review
  15. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Hyemin KimDepartment of Biology, Chungbuk National University, Cheongju, 28644, Republic of Korea.
Donghwan ShimDepartment of Forest Bio-Resources, National Institute of Forest Science, Suwon, 16631, Republic of Korea.
Suyun MoonDepartment of Biology, Chungbuk National University, Cheongju, 28644, Republic of Korea.
Jinsu LeeDepartment of Biology, Chungbuk National University, Cheongju, 28644, Republic of Korea.
Wonsil BaeDepartment of Biology, Chungbuk National University, Cheongju, 28644, Republic of Korea.
Hyunmo ChoiDepartment of Forest Bio-Resources, National Institute of Forest Science, Suwon, 16631, Republic of Korea.
Kyunghwan KimDepartment of Biology, Chungbuk National University, Cheongju, 28644, Republic of Korea.
Hojin RyuDepartment of Biology, Chungbuk National University, Cheongju, 28644, Republic of Korea. hjryu96@chungbuk.ac.kr.

Funding

National Research Foundation of Korea 2015R1A4A1041869Rural Development Administration PJ012805Rural Development Administration PJ01283704
6 · The paper itself

Abstract

MAIN

conclusionThe brassinosteroid-related BES1 and BZR1 transcription factors dynamically modulate downstream gene networks via the TPL-HDA19 co-repressor complex in BR-signaling pathways in Arabidopsis thaliana. Brassinosteroids (BRs) are plant steroid hormones that are essential for diverse growth and developmental processes across the whole life cycle of plants. In Arabidopsis thaliana, the BR-related transcription factors BRI1-EMS-SUPPRESSOR 1 (BES1) and BRASSINAZOLE-RESISTANT 1 (BZR1) regulate a range of global gene expression in response to BR and several external signaling cues; however, the molecular mechanisms by which they mediate the reprogramming of downstream transcription remain unclear. We here report that formation of a protein complex between BES1 and BZR1 and Histone Deacetylase 19 (HDA19) via the conserved ERF-associated amphiphilic repression (EAR) motif proved essential for regulation of BR-signaling-related gene expression. Defects in BR-related functions of BES1 and BZR1 proteins containing a mutated EAR motif were completely rescued by artificial fusion with EAR-repression domain (SRDX), TOPLESS (TPL), or HDA19 proteins. RNA-sequencing analysis of Arabidopsis plants over-expressing bes1-DmEAR or bes1-DmEAR-HDA19 revealed an essential role for HDA19 activity in regulation of BES1/BZR1-mediated BR signaling. In addition to BR-related gene expression, the BES1-HDA19 transcription factor complex was important for abiotic stress-related drought stress tolerance and organ boundary formation. These results suggested that integrating activation of BR-signaling pathways with the formation of the protein complex containing BES1/BZR1 and TPL-HDA19 via the EAR motif was important in fine-tuning BR-related gene networks in plants.

Indexed as

Amino Acid MotifsArabidopsisArabidopsis ProteinsBrassinosteroidsDNA-Binding ProteinsGene Regulatory NetworksHistone DeacetylasesMultiprotein ComplexesPlant Growth RegulatorsSignal TransductionStress, PhysiologicalArabidopsis ProteinsAt1g15750 protein, ArabidopsisBES1 protein, ArabidopsisBrassinosteroidsBZR1 protein, ArabidopsisDNA-Binding ProteinsHDA19 protein, ArabidopsisHistone DeacetylasesMultiprotein ComplexesPlant Growth RegulatorsBES1BrassinosteroidsHistone deacetylasePlant hormoneRNA-seqStress responseTOPLESS

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.