Evidence map›Paper›PMID 31278475›Full record

ArticleMycopathologia2020

Polyphasic Discrimination of Trichophyton tonsurans and T. equinum from Humans and Horses.

Hazal Kandemir, Karolina Dukik, Ferry Hagen, Macit Ilkit, Yvonne Gräser, G Sybren de Hoog

Open access · greenAbstract read
PubMed Publisher
In one paragraph

Article in Mycopathologia, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
3.4field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 35 citations in OpenAlex.

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  9. Comprehensive Taxonomical Analysis ofJournal of fungi (Basel, Switzerland) · 2023
    Article
  10. Review
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  12. Emerging Animal-Associated Fungal Diseases.Journal of fungi (Basel, Switzerland) · 2022
    Review
  13. Article
  14. Detection of emerging genotypes inFrontiers in microbiology · 2022
    Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Ultrastructure of hyphal cells ofCurrent medical mycology · 2020
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 5 institutions in 4 countries.

Hazal KandemirDivision of Mycology, Department of Microbiology, Faculty of Medicine, University of Çukurova, Adana, Turkey.ORCID http://orcid.org/0000-0003-0385-5840
Karolina DukikWesterdijk Fungal Biodiversity Institute, Utrecht, The Netherlands.
Ferry HagenWesterdijk Fungal Biodiversity Institute, Utrecht, The Netherlands.ORCID http://orcid.org/0000-0002-5622-1916
Macit IlkitDivision of Mycology, Department of Microbiology, Faculty of Medicine, University of Çukurova, Adana, Turkey. milkit@cu.edu.tr.ORCID http://orcid.org/0000-0002-1174-4182
Yvonne GräserInstitute für Hygiene und Mikrobiologie der Charité, Berlin, Germany.
G Sybren de HoogCentre of Expertise in Mycology, Radboud University Medical Centre/Canisius Wilhelmina Hospital, Nijmegen, The Netherlands. s.hoog@westerdijkinstitute.nl.ORCID http://orcid.org/0000-0002-5344-257X
Radboud University Nijmegen · NLCukurova University · TRInstitut für Hygiene und Umwelt · DEUniversity Medical Center Utrecht · NLWesterdijk Fungal Biodiversity Institute · NL

Funding

Federation of European Microbiological Societies (GB) FEMS-RG-2016-0067
6 · The paper itself

Abstract

The anthropophilic dermatophyte Trichophyton tonsurans and its zoophilic counterpart T. equinum are phylogenetically closely related. The barcoding marker rDNA internal transcribed spacer (ITS) shows limited variation between these two species. In the current study, we combined molecular approaches with phenotypic data to determine the species boundaries between T. tonsurans (n = 52) and T. equinum (n = 15) strains originating from humans (n = 40), horses (n = 26), and a mouse (n = 1). Culture characteristics and physiology on Trichophyton agar media 1 and 5 were evaluated. Multi-locus sequencing involving ITS, partial large rDNA subunit (LSU), β-tubulin (TUB), 60S ribosomal protein (RPB), and translation elongation factor-3 (TEF3) genes, and the mating-type (MAT) locus was performed. Amplified fragment length polymorphism data were added. None of the test results showed complete mutual correspondence. With the exception of strains from New Zealand, strains of equine origin required niacin for growth, whereas most strains from human origin did not show this dependence. It is concluded that T. tonsurans and T. equinum incompletely diverged from a common lineage relatively recently. MAT1-1 and MAT1-2 are the main distinguishing genes between the two species.

Indexed as

Amplified Fragment Length Polymorphism AnalysisAnimalsBiodiversityDNA, RibosomalGenes, Mating Type, FungalHorsesHumansMiceMultilocus Sequence TypingTrichophytonDNA, RibosomalAmplified fragment length polymorphismBiodiversityMating typeMulti-locus sequencingPhysiologyTrichophyton

Identifiers

PMID31278475
OpenAlexW2954467103

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.