Evidence map›Paper›PMID 31278324›Full record

ArticleScientific reports2019

Radiogenomics-based cancer prognosis in colorectal cancer.

Bogdan Badic, Mathieu Hatt, Stephanie Durand, Catherine Le Jossic-Corcos, Brigitte Simon, Dimitris Visvikis, Laurent Corcos

Abstract read
In one paragraph

Article in Scientific reports, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 27 papers.

0numbers the graph read from it
0cells of the map it votes in
27citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

27 citing papers in PubMed.

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  7. CT radiomic predictors of local relapse after SBRT for lung oligometastases from colorectal cancer: a single institute pilot study.Strahlentherapie und Onkologie : Organ der Deutschen Rontgengesellschaft ... [et al] · 2023
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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

7 authors.

Bogdan BadicINSERM, UMR 1101, LaTIM, 22 rue Camille Desmoulins, 29238, Brest, France. bogdan.badic@chu-brest.fr.ORCID http://orcid.org/0000-0003-4608-8960
Mathieu HattINSERM, UMR 1101, LaTIM, 22 rue Camille Desmoulins, 29238, Brest, France.ORCID http://orcid.org/0000-0002-8938-8667
Stephanie DurandINSERM, UMR 1078, 22, avenue Camille Desmoulins, 29238, Brest, France.ORCID http://orcid.org/0000-0003-2434-9429
Catherine Le Jossic-CorcosINSERM, UMR 1078, 22, avenue Camille Desmoulins, 29238, Brest, France.
Brigitte SimonINSERM, UMR 1078, 22, avenue Camille Desmoulins, 29238, Brest, France.
Dimitris VisvikisINSERM, UMR 1101, LaTIM, 22 rue Camille Desmoulins, 29238, Brest, France.
Laurent CorcosINSERM, UMR 1078, 22, avenue Camille Desmoulins, 29238, Brest, France.ORCID http://orcid.org/0000-0001-8019-2505

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Radiogenomics aims at investigating the relationship between imaging radiomic features and gene expression alterations. This study addressed the potential prognostic complementary value of contrast enhanced computed tomography (CE-CT) radiomic features and gene expression data in primary colorectal cancers (CRC). Sixty-four patients underwent CT scans and radiomic features were extracted from the delineated tumor volume. Gene expression analysis of a small set of genes, previously identified as relevant for CRC, was conducted on surgical samples from the same tumors. The relationships between radiomic and gene expression data was assessed using the Kruskal-Wallis test. Multiple testing was not performed, as this was a pilot study. Cox regression was used to identify variables related to overall survival (OS) and progression free survival (PFS). ABCC2 gene expression was correlated with N (p = 0.016) and M stages (p = 0.022). Expression changes of ABCC2, CD166, CDKNV1 and INHBB genes exhibited significant correlations with some radiomic features. OS was associated with Ratio 3D Surface/volume (p = 0.022) and ALDH1A1 expression (p = 0.042), whereas clinical stage (p = 0.004), ABCC2 expression (p = 0.035), and Entropy

Indexed as

Activated-Leukocyte Cell Adhesion MoleculeAdultAgedAntigens, CDATP-Binding Cassette, Sub-Family C ProteinsCell Adhesion Molecules, NeuronalColorectal NeoplasmsContrast MediaCyclin-Dependent Kinase Inhibitor p21FemaleFetal ProteinsGene Expression ProfilingGene Expression Regulation, NeoplasticHumansImage Interpretation, Computer-AssistedInhibin-beta SubunitsABCC2 protein, humanActivated-Leukocyte Cell Adhesion MoleculeALCAM protein, humanAntigens, CDATP-Binding Cassette, Sub-Family C ProteinsCDKN1A protein, humanCell Adhesion Molecules, NeuronalContrast MediaCyclin-Dependent Kinase Inhibitor p21Fetal ProteinsINHBB protein, humanInhibin-beta SubunitsMultidrug Resistance-Associated Protein 2

Identifiers

PMID31278324
PMCPMC6611779

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.