Evidence map›Paper›PMID 31278301›Full record

ArticleNature communications2019

Uncovering the signaling landscape controlling breast cancer cell migration identifies novel metastasis driver genes.

Esmee Koedoot, Michiel Fokkelman, Vasiliki-Maria Rogkoti, Marcel Smid, Iris van de Sandt, Hans de Bont, Chantal Pont, Janna E Klip, Steven Wink, Mieke A Timmermans and 6 more

Open access · goldAbstract readVideo-Audio Media
In one paragraph

Article in Nature communications, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 50 papers.

0numbers the graph read from it
0cells of the map it votes in
50citing papers in PubMed
4.0field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

50 citing papers in PubMed, 80 citations in OpenAlex.

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  19. Antioxidants (Basel, Switzerland) · 2022
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors at 3 institutions in 2 countries.

Esmee KoedootDivision of Drug Discovery and Safety, LACDR, Leiden University, Einsteinweg 55, Leiden, 2333 CC, Netherlands.
Michiel FokkelmanDivision of Drug Discovery and Safety, LACDR, Leiden University, Einsteinweg 55, Leiden, 2333 CC, Netherlands.ORCID http://orcid.org/0000-0002-6937-9384
Vasiliki-Maria RogkotiDivision of Drug Discovery and Safety, LACDR, Leiden University, Einsteinweg 55, Leiden, 2333 CC, Netherlands.
Marcel SmidDepartment of Medical Oncology and Cancer Genomics Netherlands, Erasmus MC Cancer Institute, Erasmus University Medical Center, Rotterdam, 3008 AE, Netherlands.
Iris van de SandtDivision of Drug Discovery and Safety, LACDR, Leiden University, Einsteinweg 55, Leiden, 2333 CC, Netherlands.
Hans de BontDivision of Drug Discovery and Safety, LACDR, Leiden University, Einsteinweg 55, Leiden, 2333 CC, Netherlands.
Chantal PontDivision of Drug Discovery and Safety, LACDR, Leiden University, Einsteinweg 55, Leiden, 2333 CC, Netherlands.
Janna E KlipDivision of Drug Discovery and Safety, LACDR, Leiden University, Einsteinweg 55, Leiden, 2333 CC, Netherlands.
Steven WinkDivision of Drug Discovery and Safety, LACDR, Leiden University, Einsteinweg 55, Leiden, 2333 CC, Netherlands.ORCID http://orcid.org/0000-0003-1189-7231
Mieke A TimmermansDepartment of Medical Oncology and Cancer Genomics Netherlands, Erasmus MC Cancer Institute, Erasmus University Medical Center, Rotterdam, 3008 AE, Netherlands.
Erik A C WiemerDepartment of Medical Oncology and Cancer Genomics Netherlands, Erasmus MC Cancer Institute, Erasmus University Medical Center, Rotterdam, 3008 AE, Netherlands.
Peter StoilovDepartment of Biochemistry and Cancer Institute, Robert C. Byrd Health Sciences Center, West Virginia University, Morgantown, WV, 26506, USA.
John A FoekensDepartment of Medical Oncology and Cancer Genomics Netherlands, Erasmus MC Cancer Institute, Erasmus University Medical Center, Rotterdam, 3008 AE, Netherlands.
Sylvia E Le DévédecDivision of Drug Discovery and Safety, LACDR, Leiden University, Einsteinweg 55, Leiden, 2333 CC, Netherlands.ORCID http://orcid.org/0000-0002-0615-9616
John W M MartensDepartment of Medical Oncology and Cancer Genomics Netherlands, Erasmus MC Cancer Institute, Erasmus University Medical Center, Rotterdam, 3008 AE, Netherlands.ORCID http://orcid.org/0000-0002-3428-3366
Bob van de WaterDivision of Drug Discovery and Safety, LACDR, Leiden University, Einsteinweg 55, Leiden, 2333 CC, Netherlands. b.water@lacdr.leidenuniv.nl.
Leiden University · NLErasmus MC · NLWest Virginia University · US

Funding

KWF Kankerbestrijding (Dutch Cancer Society) 2011-5124
6 · The paper itself

Abstract

Ttriple-negative breast cancer (TNBC) is an aggressive and highly metastatic breast cancer subtype. Enhanced TNBC cell motility is a prerequisite of TNBC cell dissemination. Here, we apply an imaging-based RNAi phenotypic cell migration screen using two highly motile TNBC cell lines (Hs578T and MDA-MB-231) to provide a repository of signaling determinants that functionally drive TNBC cell motility. We have screened ~4,200 target genes individually and discovered 133 and 113 migratory modulators of Hs578T and MDA-MB-231, respectively, which are linked to signaling networks predictive for breast cancer progression. The splicing factors PRPF4B and BUD31 and the transcription factor BPTF are essential for cancer cell migration, amplified in human primary breast tumors and associated with metastasis-free survival. Depletion of PRPF4B, BUD31 and BPTF causes primarily down regulation of genes involved in focal adhesion and ECM-interaction pathways. PRPF4B is essential for TNBC metastasis formation in vivo, making PRPF4B a candidate for further drug development.

Indexed as

Gene Expression Regulation, NeoplasticAntigens, NuclearBromodomain Containing ProteinsCell Line, TumorCell MovementCohort StudiesDatasets as TopicDisease-Free SurvivalExtracellular MatrixFemaleFocal AdhesionsHumansIntravital MicroscopyNerve Tissue ProteinsNuclear ProteinsProtein Serine-Threonine KinasesAntigens, NuclearBromodomain Containing ProteinsBUD31 protein, humanfetal Alzheimer antigenNerve Tissue ProteinsNuclear ProteinsProtein Serine-Threonine KinasesPRPF4B protein, humanRibonucleoprotein, U4-U6 Small NuclearRNA, Small InterferingTranscription Factors

Identifiers

PMID31278301
PMCPMC6611796
OpenAlexW2955141070

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.