Evidence map›Paper›PMID 31278255›Full record

ArticleNature communications2019

Upper tract urothelial carcinoma has a luminal-papillary T-cell depleted contexture and activated FGFR3 signaling.

Brian D Robinson, Panagiotis J Vlachostergios, Bhavneet Bhinder, Weisi Liu, Kailyn Li, Tyler J Moss, Rohan Bareja, Kyung Park, Peyman Tavassoli, Joanna Cyrta and 14 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 117 papers, 5 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
117citing papers in PubMed, 5 pooled it
27.6field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

117 citing papers in PubMed, 5 syntheses or guidelines pooled it, 207 citations in OpenAlex.

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57 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

24 authors at 5 institutions in 5 countries.

Brian D RobinsonDepartment of Pathology and Laboratory Medicine, Weill Cornell Medicine, New York, NY, 10065, USA.
Panagiotis J VlachostergiosDepartment of Medicine, Division of Hematology and Medical Oncology, Weill Cornell Medicine, New York, NY, 10065, USA.
Bhavneet BhinderDepartment of Physiology and Biophysics, Weill Cornell Medicine, New York, NY, 10065, USA.
Weisi LiuDepartment of Medicine, Division of Hematology and Medical Oncology, Weill Cornell Medicine, New York, NY, 10065, USA.
Kailyn LiDepartment of Medicine, Division of Hematology and Medical Oncology, Weill Cornell Medicine, New York, NY, 10065, USA.
Tyler J MossDepartment of Bioinformatics and Computational Biology, The University of Texas MD Anderson Cancer Center, Houston, TX, 77030, USA.
Rohan BarejaDepartment of Physiology and Biophysics, Weill Cornell Medicine, New York, NY, 10065, USA.
Kyung ParkDepartment of Pathology and Laboratory Medicine, Weill Cornell Medicine, New York, NY, 10065, USA.
Peyman TavassoliDepartment of Pathology and Laboratory Medicine, Weill Cornell Medicine, New York, NY, 10065, USA.
Joanna CyrtaDepartment of Pathology and Laboratory Medicine, Weill Cornell Medicine, New York, NY, 10065, USA.
Scott T TagawaDepartment of Urology, Weill Cornell Medicine, New York, NY, 10065, USA.ORCID http://orcid.org/0000-0003-2777-8587
David M NanusDepartment of Urology, Weill Cornell Medicine, New York, NY, 10065, USA.
Himisha BeltranDepartment of Urology, Weill Cornell Medicine, New York, NY, 10065, USA.
Ana M MolinaDepartment of Urology, Weill Cornell Medicine, New York, NY, 10065, USA.
Francesca KhaniDepartment of Pathology and Laboratory Medicine, Weill Cornell Medicine, New York, NY, 10065, USA.
Juan Miguel MosqueraDepartment of Pathology and Laboratory Medicine, Weill Cornell Medicine, New York, NY, 10065, USA.
Evanguelos XylinasDepartment of Urology, Weill Cornell Medicine, New York, NY, 10065, USA.
Shahrokh F ShariatDepartment of Urology, Weill Cornell Medicine, New York, NY, 10065, USA.
Douglas S ScherrDepartment of Urology, Weill Cornell Medicine, New York, NY, 10065, USA.
Mark A RubinDepartment of Pathology and Laboratory Medicine, Weill Cornell Medicine, New York, NY, 10065, USA.ORCID http://orcid.org/0000-0002-8321-9950
Seth P LernerScott Department of Urology, Baylor College of Medicine, Houston, TX, 77030, USA.
Surena F MatinDepartment of Urology, The University of Texas MD Anderson Cancer Center, Houston, TX, 77030, USA.
Olivier ElementoEnglander Institute for Precision Medicine, Weill Cornell Medicine, New York, NY, 10021, USA.
Bishoy M FaltasEnglander Institute for Precision Medicine, Weill Cornell Medicine, New York, NY, 10021, USA. bmf9003@med.cornell.edu.ORCID http://orcid.org/0000-0002-6432-1693
Cornell University · USThe University of Texas MD Anderson Cancer Center · USBaylor College of Medicine · USDélégation Paris 5 · FRUniversity of Bern · CH

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Upper tract urothelial carcinoma (UTUC) is characterized by a distinctly aggressive clinical phenotype. To define the biological features driving this phenotype, we performed an integrated analysis of whole-exome and RNA sequencing of UTUC. Here we report several key insights from our molecular dissection of this disease: 1) Most UTUCs are luminal-papillary; 2) UTUC has a T-cell depleted immune contexture; 3) High FGFR3 expression is enriched in UTUC and correlates with its T-cell depleted immune microenvironment; 4) Sporadic UTUC is characterized by a lower total mutational burden than urothelial carcinoma of the bladder. Our findings lay the foundation for a deeper understanding of UTUC biology and provide a rationale for the development of UTUC-specific treatment strategies.

Indexed as

AgedAged, 80 and overCarcinoma, Transitional CellDNA Mutational AnalysisDown-RegulationExome SequencingFemaleGene Expression ProfilingGene Expression Regulation, NeoplasticHumansKidney NeoplasmsMaleMicrosatellite InstabilityMiddle AgedMutationReceptor, Fibroblast Growth Factor, Type 3FGFR3 protein, humanReceptor, Fibroblast Growth Factor, Type 3

Identifiers

PMID31278255
PMCPMC6611775
OpenAlexW2954656275

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.