Evidence map›Paper›PMID 31276249›Full record

ArticleThe Plant journal : for cell and molecular biology2019

Gene modification by fast-track recombineering for cellular localization and isolation of components of plant protein complexes.

Zhoubo Hu, Ajit Ghosh, Sara C Stolze, Mihály Horváth, Bing Bai, Sabine Schaefer, Simone Zündorf, Shanda Liu, Anne Harzen, Mohsen Hajheidari and 4 more

Open access · hybridAbstract read
In one paragraph

Article in The Plant journal : for cell and molecular biology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
0.3field-weighted citation impact, top 41% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 7 citations in OpenAlex.

  1. Article
  2. Article
  3. Beyond a few bases: methods for large DNA insertion and gene targeting in plants.The Plant journal : for cell and molecular biology · 2025
    Review
  4. Article
  5. A constitutively monomeric UVR8 photoreceptor confers enhanced UV-B photomorphogenesis.Proceedings of the National Academy of Sciences of the United States of America · 2021
    Article
  6. A Highly EfficientPlant communications · 2020
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 5 institutions in 4 countries.

Zhoubo HuMax-Planck Institute for Plant Breeding Research, Carl-von-Linné-Weg 10, D-50829, Cologne, Germany.
Ajit GhoshMax-Planck Institute for Plant Breeding Research, Carl-von-Linné-Weg 10, D-50829, Cologne, Germany.
Sara C StolzeMax-Planck Institute for Plant Breeding Research, Carl-von-Linné-Weg 10, D-50829, Cologne, Germany.
Mihály HorváthMax-Planck Institute for Plant Breeding Research, Carl-von-Linné-Weg 10, D-50829, Cologne, Germany.
Bing BaiMax-Planck Institute for Plant Breeding Research, Carl-von-Linné-Weg 10, D-50829, Cologne, Germany.
Sabine SchaeferMax-Planck Institute for Plant Breeding Research, Carl-von-Linné-Weg 10, D-50829, Cologne, Germany.
Simone ZündorfMax-Planck Institute for Plant Breeding Research, Carl-von-Linné-Weg 10, D-50829, Cologne, Germany.
Shanda LiuMax-Planck Institute for Plant Breeding Research, Carl-von-Linné-Weg 10, D-50829, Cologne, Germany.
Anne HarzenMax-Planck Institute for Plant Breeding Research, Carl-von-Linné-Weg 10, D-50829, Cologne, Germany.
Mohsen HajheidariMax-Planck Institute for Plant Breeding Research, Carl-von-Linné-Weg 10, D-50829, Cologne, Germany.
Tomasz J SarnowskiMax-Planck Institute for Plant Breeding Research, Carl-von-Linné-Weg 10, D-50829, Cologne, Germany.
Hirofumi NakagamiMax-Planck Institute for Plant Breeding Research, Carl-von-Linné-Weg 10, D-50829, Cologne, Germany.
Zsuzsa KonczMax-Planck Institute for Plant Breeding Research, Carl-von-Linné-Weg 10, D-50829, Cologne, Germany.
Csaba KonczMax-Planck Institute for Plant Breeding Research, Carl-von-Linné-Weg 10, D-50829, Cologne, Germany.ORCID 0000-0003-4422-9993
Max Planck Institute for Plant Breeding Research · DEHUN-REN Szegedi Biológiai Kutatóközpont · HUInstitute of Biochemistry and Biophysics, Polish Academy of Sciences · PLShahjalal University of Science and Technology · BDUniversity of Cologne · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

To accelerate the isolation of plant protein complexes and study cellular localization and interaction of their components, an improved recombineering protocol is described for simple and fast site-directed modification of plant genes in bacterial artificial chromosomes (BACs). Coding sequences of fluorescent and affinity tags were inserted into genes and transferred together with flanking genomic sequences of desired size by recombination into Agrobacterium plant transformation vectors using three steps of E. coli transformation with PCR-amplified DNA fragments. Application of fast-track recombineering is illustrated by the simultaneous labelling of CYCLIN-DEPENDENT KINASE D (CDKD) and CYCLIN H (CYCH) subunits of kinase module of TFIIH general transcription factor and the CDKD-activating CDKF;1 kinase with green fluorescent protein (GFP) and mCherry (green and red fluorescent protein) tags, and a PIPL (His

Indexed as

ArabidopsisArabidopsis ProteinsChromosomes, Artificial, BacterialCyclin-Dependent KinasesEscherichia coliGenes, ReporterGenetic EngineeringGreen Fluorescent ProteinsHistonesLuminescent ProteinsMutagenesis, InsertionalPlants, Genetically ModifiedRecombination, GeneticRed Fluorescent ProteinArabidopsis ProteinsCyclin-Dependent KinasesGreen Fluorescent ProteinsHistonesLuminescent ProteinsRed Fluorescent Proteinaffinity purificationDNA replication-dependent HISTONE H3.1fluorescent reportersrecombineeringsite-directed gene modificationtechnical advanceTFIIH protein kinases

Identifiers

PMID31276249
PMCPMC6852550
OpenAlexW2955838730

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.