Evidence map›Paper›PMID 31276165›Full record

Trial reportInflammatory bowel diseases2019

Treatment-Specific Composition of the Gut Microbiota Is Associated With Disease Remission in a Pediatric Crohn's Disease Cohort.

Daniel Sprockett, Natalie Fischer, Rotem Sigall Boneh, Dan Turner, Jarek Kierkus, Malgorzata Sladek, Johanna C Escher, Eytan Wine, Baruch Yerushalmi, Jorge Amil Dias and 7 more

Open access · greenAbstract readMulticenter StudyRandomized Controlled Trial
In one paragraph

Trial report in Inflammatory bowel diseases, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed, 1 pooled it
3.0field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 1 synthesis or guideline pooled it, 31 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Article
  4. Article
  5. Review
  6. Article
  7. Review
  8. Different Primary Locations of Crohn's Disease Are Associated with Unique Microbiome Profiles.Journal of gastrointestinal surgery : official journal of the Society for Surgery of the Alimentary Tract · 2023
    Article
  9. Review
  10. Article
  11. Review
  12. Review
  13. Article
  14. Article
  15. Article
  16. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors at 15 institutions in 6 countries.

Daniel SprockettDepartment of Microbiology & Immunology, Stanford University School of Medicine, Stanford, California, USA.
Natalie FischerDivision of Infectious Diseases & Geographic Medicine, Department of Medicine, Stanford University School of Medicine, Stanford, California, USA.
Rotem Sigall BonehPediatric Gastroenterology and Nutrition Unit, Wolfson Medical Center, Holon, Israel.
Dan TurnerThe Juliet Keidan Institute of Pediatric Gastroenterology & Nutrition, Shaare Zedek Medical Center, The Hebrew University of Jerusalem, Jerusalem, Israel.
Jarek KierkusDepartment of Gastroenterology, Hepatology, Feeding Disorders and Pediatrics, The Children's Memorial Health Institute, Warsaw, Poland.
Malgorzata SladekDepartment of Pediatrics, Gastroenterology and Nutrition, Jagiellonian University Medical College, Cracow, Poland.
Johanna C EscherDepartment of Pediatric Gastroenterology, Erasmus MC-Sophia Children's Hospital, Rotterdam, the Netherlands.
Eytan WineDivision of Pediatric Gastroenterology and Nutrition, Department of Pediatrics, University of Alberta, Edmonton, Canada.
Baruch YerushalmiPediatric Gastroenterology Unit, Soroka University Medical Center, and Faculty of Health Sciences, Ben-Gurion University of the Negev, Beer Sheva, Israel.
Jorge Amil DiasDepartment of Pediatrics, Hospital de Sao Joao, Porto, Portugal.
Ron ShaoulPediatric Gastroenterology Unit, Ruth Children's Hospital, Rambam Medical Center, Haifa, Israel.
Michal KoriPediatric Day Care Unit, Kaplan Medical Center, Rehovot, Israel.
Scott B SnapperDivision of Gastroenterology, Hepatology, and Nutrition, Boston Children's Hospital, Boston, Massachusetts, USA.
Susan HolmesDepartment of Statistics, Stanford University, Stanford, California, USA.
Athos BousvarosDivision of Gastroenterology, Hepatology, and Nutrition, Boston Children's Hospital, Boston, Massachusetts, USA.
Arie LevinePediatric Gastroenterology and Nutrition Unit, Wolfson Medical Center, Holon, Israel.
David A RelmanDepartment of Microbiology & Immunology, Stanford University School of Medicine, Stanford, California, USA.
Stanford University · USBen-Gurion University of the Negev · ILBoston Children's Hospital · USBrigham and Women's Hospital · USChildren's Memorial Health Institute · PLErasmus MC - Sophia Children’s Hospital · NLHebrew University of Jerusalem · ILHospital de São João · PTJagiellonian University · PLKaplan Medical Center · ILRambam Health Care Campus · ILTel Aviv University · ILUniversity of Alberta · CAVA Palo Alto Health Care System · USWolfson Medical Center · IL

Funding

Supplement to Enhance Wellness and Resiliency in the Graduate EnvironmentT32GM007276 · NIGMS · STANFORD UNIVERSITY · PI MORRISON, ASHBY J. · 1985 to 2023
$32.9M
STRUCTURE-FUNCTION RELATIONSHIPS IN THE ALIMENTARY TRACTP30DK034854 · NIDDK · HARVARD UNIVERSITY (MEDICAL SCHOOL) · PI JONATHAN C KAGAN · 1986 to 2026
$32.4M
NIDDK NIH HHS P30 DK034854NIGMS NIH HHS T32 GM007276
6 · The paper itself

Abstract

backgroundThe beneficial effects of antibiotics in Crohn's disease (CD) depend in part on the gut microbiota but are inadequately understood. We investigated the impact of metronidazole (MET) and metronidazole plus azithromycin (MET+AZ) on the microbiota in pediatric CD and the use of microbiota features as classifiers or predictors of disease remission.

methods16S rRNA-based microbiota profiling was performed on stool samples from 67 patients in a multinational, randomized, controlled, longitudinal, 12-week trial of MET vs MET+AZ in children with mild to moderate CD. Profiles were analyzed together with disease activity, and then used to construct random forest models to classify remission or predict treatment response.

resultsBoth MET and MET+AZ significantly decreased diversity of the microbiota and caused large treatment-specific shifts in microbiota structure at week 4. Disease remission was associated with a treatment-specific microbiota configuration. Random forest models constructed from microbiota profiles before and during antibiotic treatment with metronidazole accurately classified disease remission in this treatment group (area under the curve [AUC], 0.879; 95% confidence interval, 0.683-0.9877; sensitivity, 0.7778; specificity, 1.000; P < 0.001). A random forest model trained on pre-antibiotic microbiota profiles predicted disease remission at week 4 with modest accuracy (AUC, 0.8; P = 0.24).

conclusionsMET and MET+AZ antibiotic regimens in pediatric CD lead to distinct gut microbiota structures at remission. It may be possible to classify and predict remission based in part on microbiota profiles, but larger cohorts will be needed to realize this goal.

Indexed as

AdolescentAnti-Bacterial AgentsAzithromycinChildChild, PreschoolCrohn DiseaseDrug Therapy, CombinationFemaleGastrointestinal MicrobiomeHumansMaleMetronidazoleRemission InductionRNA, Ribosomal, 16STreatment OutcomeAnti-Bacterial AgentsAzithromycinMetronidazoleRNA, Ribosomal, 16Santibioticsdisease remissionmicrobiotapediatric Crohn’s diseaserandom forest model

Identifiers

PMID31276165
PMCPMC7185687
OpenAlexW2954898194

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.