Evidence map›Paper›PMID 31275749›Full record

ArticlePeerJ2019

Molecular mechanisms linking peri-implantitis and type 2 diabetes mellitus revealed by transcriptomic analysis.

Tianliang Yu, Aneesha Acharya, Nikos Mattheos, Simin Li, Dirk Ziebolz, Gerhard Schmalz, Rainer Haak, Jana Schmidt, Yu Sun

Open access · goldAbstract read
In one paragraph

Article in PeerJ, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
1.7field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 28 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 4 institutions in 4 countries.

Tianliang YuDepartment of Prosthodontics, School of Dentistry, Harbin Medical University, Harbin, Heilongjiang, China.
Aneesha AcharyaFaculty of Dentistry, University of Hong Kong, Hong Kong, China.ORCID 0000-0002-9319-6780
Nikos MattheosFaculty of Dentistry, University of Hong Kong, Hong Kong, China.ORCID 0000-0001-7358-7496
Simin LiDepartment of Cariology, Endodontology and Periodontology, University Leipzig, Leipzig, Saxon, Germany.
Dirk ZiebolzDepartment of Cariology, Endodontology and Periodontology, University Leipzig, Leipzig, Saxon, Germany.ORCID 0000-0002-9810-2368
Gerhard SchmalzDepartment of Cariology, Endodontology and Periodontology, University Leipzig, Leipzig, Saxon, Germany.
Rainer HaakDepartment of Cariology, Endodontology and Periodontology, University Leipzig, Leipzig, Saxon, Germany.
Jana SchmidtDepartment of Cariology, Endodontology and Periodontology, University Leipzig, Leipzig, Saxon, Germany.
Yu SunDepartment of Prosthodontics, School of Dentistry, Harbin Medical University, Harbin, Heilongjiang, China.
Leipzig University · DEHarbin Medical University · CNDr D Y Patil Dental College & Hospital · INUniversity of Hong Kong · HK

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

aimsTo explore molecular mechanisms that link peri-implantitis and type 2 diabetes mellitus (T2DM) by bioinformatic analysis of publicly available experimental transcriptomic data. MATERIALS AND

methodsGene expression data from peri-implantitis were downloaded from the Gene Expression Omnibus database, integrated and differentially expressed genes (DEGs) in peri-implantitis were identified. Next, experimentally validated and computationally predicted genes related to T2DM were downloaded from the DisGeNET database. Protein-protein interaction network (PPI) pairs of DEGs related to peri-implantitis and T2DM related genes were constructed, "hub" genes and overlapping DEG were determined. Functional enrichment analysis was used to identify significant shared biological processes and signaling pathways. The PPI networks were subjected to cluster and specific class analysis for identifying "leader" genes. Module network analysis of the merged PPI network identified common or cross-talk genes connecting the two networks.

resultsA total of 92 DEGs overlapped between peri-implantitis and T2DM datasets. Three hub genes (IL-6, NFKB1, and PIK3CG) had the highest degree in PPI networks of both peri-implantitis and T2DM. Three leader genes (PSMD10, SOS1, WASF3), eight cross-talk genes (PSMD10, PSMD6, EIF2S1, GSTP1, DNAJC3, SEC61A1, MAPT, and NME1), and one signaling pathway (IL-17 signaling) emerged as peri-implantitis and T2DM linkage mechanisms.

conclusionsExploration of available transcriptomic datasets revealed IL-6, NFKB1, and PIK3CG expression along with the IL-17 signaling pathway as top candidate molecular linkage mechanisms between peri-implantitis and T2DM.

Indexed as

BioinformaticsGenePathwayPeri-implantitisType 2 diabetes

Identifiers

PMID31275749
PMCPMC6590641
OpenAlexW2952248817

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.