Evidence map›Paper›PMID 31273328›Full record

ArticleNature medicine2019

Personal clinical history predicts antibiotic resistance of urinary tract infections.

Idan Yelin, Olga Snitser, Gal Novich, Rachel Katz, Ofir Tal, Miriam Parizade, Gabriel Chodick, Gideon Koren, Varda Shalev, Roy Kishony

Abstract read
In one paragraph

Article in Nature medicine, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 108 papers, 4 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
108citing papers in PubMed, 4 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

108 citing papers in PubMed, 4 syntheses or guidelines pooled it.

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  8. AI-nanotech synergies: recent advances in sustainable bio-manufacturing.World journal of microbiology & biotechnology · 2026
    Review
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48 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Idan YelinFaculty of Biology, Technion-Israel Institute of Technology, Haifa, Israel.ORCID http://orcid.org/0000-0003-2515-4113
Olga SnitserFaculty of Biology, Technion-Israel Institute of Technology, Haifa, Israel.
Gal NovichDepartment of Computer Science, Technion-Israel Institute of Technology, Haifa, Israel.
Rachel KatzMaccabitech, Maccabi Healthcare Services, Tel-Aviv, Israel.
Ofir TalLorry I. Lokey Interdisciplinary Center for Life Sciences & Engineering, Technion-Israel Institute of Technology, Haifa, Israel.
Miriam ParizadeMaccabi Healthcare Services, National Laboratory, Rechovot, Israel.
Gabriel ChodickMaccabitech, Maccabi Healthcare Services, Tel-Aviv, Israel.ORCID http://orcid.org/0000-0002-5189-8995
Gideon KorenMaccabitech, Maccabi Healthcare Services, Tel-Aviv, Israel.
Varda ShalevMaccabitech, Maccabi Healthcare Services, Tel-Aviv, Israel.
Roy KishonyFaculty of Biology, Technion-Israel Institute of Technology, Haifa, Israel. rkishony@technion.ac.il.ORCID http://orcid.org/0000-0002-5013-5072

Funding

The population genetics of antibiotic resistance in multi-drug environmentsR01GM081617 · NIGMS · TECHNION-ISRAEL INSTITUTE OF TECHNOLOGY · PI KISHONY, ROY · 2007 to 2018
$3.7M
NIGMS NIH HHS R01 GM081617
6 · The paper itself

Abstract

Antibiotic resistance is prevalent among the bacterial pathogens causing urinary tract infections. However, antimicrobial treatment is often prescribed 'empirically', in the absence of antibiotic susceptibility testing, risking mismatched and therefore ineffective treatment. Here, linking a 10-year longitudinal data set of over 700,000 community-acquired urinary tract infections with over 5,000,000 individually resolved records of antibiotic purchases, we identify strong associations of antibiotic resistance with the demographics, records of past urine cultures and history of drug purchases of the patients. When combined together, these associations allow for machine-learning-based personalized drug-specific predictions of antibiotic resistance, thereby enabling drug-prescribing algorithms that match an antibiotic treatment recommendation to the expected resistance of each sample. Applying these algorithms retrospectively, over a 1-year test period, we find that they greatly reduce the risk of mismatched treatment compared with the current standard of care. The clinical application of such algorithms may help improve the effectiveness of antimicrobial treatments.

Indexed as

AdolescentAdultAgedAged, 80 and overAlgorithmsAnti-Bacterial AgentsChildChild, PreschoolDrug Resistance, BacterialFemaleHumansInfantInfant, NewbornMaleMiddle AgedRetrospective StudiesAnti-Bacterial Agents

Identifiers

PMID31273328
PMCPMC6962525

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.