Evidence map›Paper›PMID 31272828›Full record

ArticleNeuron2019

Plug-and-Play Protein Modification Using Homology-Independent Universal Genome Engineering.

Yudong Gao, Erin Hisey, Tyler W A Bradshaw, Eda Erata, Walter E Brown, Jamie L Courtland, Akiyoshi Uezu, Yu Xiang, Yarui Diao, Scott H Soderling

Abstract read
In one paragraph

Article in Neuron, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 69 papers.

0numbers the graph read from it
0cells of the map it votes in
69citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

69 citing papers in PubMed.

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  19. Hide-and-Seek genome editing reveals that Gephyrin is required for axo-axonic synapse assembly.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  20. Review

9 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Yudong GaoDepartment of Cell Biology, Duke University Medical School, Durham, NC 27710, USA.
Erin HiseyDepartment of Cell Biology, Duke University Medical School, Durham, NC 27710, USA.
Tyler W A BradshawDepartment of Cell Biology, Duke University Medical School, Durham, NC 27710, USA; Department of Neurobiology, Duke University Medical School, Durham, NC 27710, USA.
Eda ErataDepartment of Cell Biology, Duke University Medical School, Durham, NC 27710, USA.
Walter E BrownDepartment of Cell Biology, Duke University Medical School, Durham, NC 27710, USA.
Jamie L CourtlandDepartment of Cell Biology, Duke University Medical School, Durham, NC 27710, USA; Department of Neurobiology, Duke University Medical School, Durham, NC 27710, USA.
Akiyoshi UezuDepartment of Cell Biology, Duke University Medical School, Durham, NC 27710, USA.
Yu XiangDepartment of Cell Biology, Duke University Medical School, Durham, NC 27710, USA.
Yarui DiaoDepartment of Cell Biology, Duke University Medical School, Durham, NC 27710, USA.
Scott H SoderlingDepartment of Cell Biology, Duke University Medical School, Durham, NC 27710, USA; Department of Neurobiology, Duke University Medical School, Durham, NC 27710, USA. Electronic address: scott.soderling@duke.edu.

Funding

MEDICAL SCIENTIST TRAINING PROGRAMT32GM007171 · NIGMS · DUKE UNIVERSITY · PI KONTOS, CHRISTOPHER D · 1985 to 2021
$31.2M
Analysis of Inhibitory Synaptic Proteins Associated with Brain DisordersR01NS102456 · NINDS · DUKE UNIVERSITY · PI SODERLING, SCOTT H · 2017 to 2021
$2.6M
Molecular, Synaptic, and Circuit Basis for Schizophrenia-related PhenotypesR01MH103374 · NIMH · DUKE UNIVERSITY · PI SODERLING, SCOTT H · 2014 to 2018
$2.0M
NIGMS NIH HHS T32 GM007171NIMH NIH HHS R01 MH103374NINDS NIH HHS R01 NS102456
6 · The paper itself

Abstract

Analysis of endogenous protein localization, function, and dynamics is fundamental to the study of all cells, including the diversity of cell types in the brain. However, current approaches are often low throughput and resource intensive. Here, we describe a CRISPR-Cas9-based homology-independent universal genome engineering (HiUGE) method for endogenous protein manipulation that is straightforward, scalable, and highly flexible in terms of genomic target and application. HiUGE employs adeno-associated virus (AAV) vectors of autonomous insertional sequences (payloads) encoding diverse functional modifications that can integrate into virtually any genomic target loci specified by easily assembled gene-specific guide-RNA (GS-gRNA) vectors. We demonstrate that universal HiUGE donors enable rapid alterations of proteins in vitro or in vivo for protein labeling and dynamic visualization, neural-circuit-specific protein modification, subcellular rerouting and sequestration, and truncation-based structure-function analysis. Thus, the "plug-and-play" nature of HiUGE enables high-throughput and modular analysis of mechanisms driving protein functions in cellular neurobiology.

Indexed as

Protein Processing, Post-TranslationalAnimalsBrainCells, CulturedCRISPR-Cas SystemsDependovirusGene EditingGene Knock-In TechniquesGenetic VectorsGenomicsHumansImmunochemistryInteinsMiceMutagenesis, InsertionalNerve Tissue ProteinsNerve Tissue ProteinsRecombinant Fusion ProteinsRNA, Guide, CRISPR-Cas SystemsCRISPRgenomicsHiUGEimmunolabelingknockinproteomics

Identifiers

PMID31272828
PMCPMC7200071

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.