Evidence map›Paper›PMID 31271506›Full record

ArticleEnvironmental microbiology2019

Characterization of a thaumarchaeal symbiont that drives incomplete nitrification in the tropical sponge Ianthella basta.

Florian U Moeller, Nicole S Webster, Craig W Herbold, Faris Behnam, Daryl Domman, Mads Albertsen, Maria Mooshammer, Stephanie Markert, Dmitrij Turaev, Dörte Becher and 6 more

Open access · hybridAbstract read
In one paragraph

Article in Environmental microbiology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 32 papers.

0numbers the graph read from it
0cells of the map it votes in
32citing papers in PubMed
7.1field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

32 citing papers in PubMed, 58 citations in OpenAlex.

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  4. The archaeal classmBio · 2025
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors at 4 institutions in 6 countries.

Florian U MoellerCentre for Microbiology and Environmental Systems Science, Division of Microbial Ecology, University of Vienna, Austria.ORCID 0000-0002-6428-3877
Nicole S WebsterAustralian Institute of Marine Science, Townsville, Queensland, Australia.ORCID 0000-0002-4753-5278
Craig W HerboldCentre for Microbiology and Environmental Systems Science, Division of Microbial Ecology, University of Vienna, Austria.
Faris BehnamCentre for Microbiology and Environmental Systems Science, Division of Microbial Ecology, University of Vienna, Austria.
Daryl DommanCentre for Microbiology and Environmental Systems Science, Division of Microbial Ecology, University of Vienna, Austria.
Mads AlbertsenCenter for Microbial Communities, Department of Chemistry and Bioscience, Aalborg University, 9220, Aalborg, Denmark.
Maria MooshammerCentre for Microbiology and Environmental Systems Science, Division of Microbial Ecology, University of Vienna, Austria.
Stephanie MarkertInstitute of Marine Biotechnology e.V, Greifswald, Germany.
Dmitrij TuraevCentre for Microbiology and Environmental Systems Science, Division of Computational Systems Biology, University of Vienna, Austria.
Dörte BecherInstitute of Microbiology, Microbial Proteomics, University of Greifswald, Greifswald, Germany.
Thomas RatteiCentre for Microbiology and Environmental Systems Science, Division of Computational Systems Biology, University of Vienna, Austria.
Thomas SchwederInstitute of Marine Biotechnology e.V, Greifswald, Germany.
Andreas RichterCentre for Microbiology and Environmental Systems Science, Division of Terrestrial Ecosystem Research, University of Vienna, Austria.
Margarete WatzkaCentre for Microbiology and Environmental Systems Science, Division of Terrestrial Ecosystem Research, University of Vienna, Austria.
Per Halkjaer NielsenCenter for Microbial Communities, Department of Chemistry and Bioscience, Aalborg University, 9220, Aalborg, Denmark.
Michael WagnerCentre for Microbiology and Environmental Systems Science, Division of Microbial Ecology, University of Vienna, Austria.ORCID 0000-0002-9778-7684
University of Vienna · ATUniversitätsmedizin Greifswald · DEAalborg University · DKAustralian Institute of Marine Science · AU

Funding

European Research Council Advanced Grant project NITRICARE 294343Marie CurieMarie Curie Initial Training Networks FP7-PEOPLE-2010-ITM SymbiomicsVILLUM FONDEN Research grants 15510; 16578
6 · The paper itself

Abstract

Marine sponges represent one of the few eukaryotic groups that frequently harbour symbiotic members of the Thaumarchaeota, which are important chemoautotrophic ammonia-oxidizers in many environments. However, in most studies, direct demonstration of ammonia-oxidation by these archaea within sponges is lacking, and little is known about sponge-specific adaptations of ammonia-oxidizing archaea (AOA). Here, we characterized the thaumarchaeal symbiont of the marine sponge Ianthella basta using metaproteogenomics, fluorescence in situ hybridization, qPCR and isotope-based functional assays. 'Candidatus Nitrosospongia ianthellae' is only distantly related to cultured AOA. It is an abundant symbiont that is solely responsible for nitrite formation from ammonia in I. basta that surprisingly does not harbour nitrite-oxidizing microbes. Furthermore, this AOA is equipped with an expanded set of extracellular subtilisin-like proteases, a metalloprotease unique among archaea, as well as a putative branched-chain amino acid ABC transporter. This repertoire is strongly indicative of a mixotrophic lifestyle and is (with slight variations) also found in other sponge-associated, but not in free-living AOA. We predict that this feature as well as an expanded and unique set of secreted serpins (protease inhibitors), a unique array of eukaryotic-like proteins, and a DNA-phosporothioation system, represent important adaptations of AOA to life within these ancient filter-feeding animals.

Indexed as

AmmoniaAnimalsArchaeaChemoautotrophic GrowthIn Situ Hybridization, FluorescenceNitrificationNitritesOxidation-ReductionPhylogenyPoriferaSoil MicrobiologyAmmoniaNitrites

Identifiers

PMID31271506
PMCPMC6790972
OpenAlexW2953470974

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.