Evidence map›Paper›PMID 31270356›Full record

ArticleScientific reports2019

CRISPR knockout screen implicates three genes in lysosome function.

Guy M Lenk, Young N Park, Rosemary Lemons, Emma Flynn, Margaret Plank, Christen M Frei, Michael J Davis, Brian Gregorka, Joel A Swanson, Miriam H Meisler and 1 more

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers.

0numbers the graph read from it
0cells of the map it votes in
26citing papers in PubMed
4.4field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

26 citing papers in PubMed, 44 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Review
  5. Article
  6. Article
  7. Transcriptome-wide root causal inference.PLoS computational biology · 2025
    Article
  8. Protein family FAM241 in human and mouse.Mammalian genome : official journal of the International Mammalian Genome Society · 2025
    Article
  9. Transcriptome-Wide Root Causal Inference.medRxiv : the preprint server for health sciences · 2024
    Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Adding a Chemical Biology Twist to CRISPR Screening.Israel journal of chemistry · 2023
    Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Click chemistry-enabled CRISPR screening reveals GSK3 as a regulator of PLD signaling.Proceedings of the National Academy of Sciences of the United States of America · 2021
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 1 institution in 1 country.

Guy M LenkDepartment of Human Genetics, University of Michigan, Ann Arbor, MI, 48109-5618, USA. glenk@umich.edu.ORCID http://orcid.org/0000-0001-8092-1405
Young N ParkDepartment of Human Genetics, University of Michigan, Ann Arbor, MI, 48109-5618, USA.
Rosemary LemonsDepartment of Human Genetics, University of Michigan, Ann Arbor, MI, 48109-5618, USA.
Emma FlynnDepartment of Human Genetics, University of Michigan, Ann Arbor, MI, 48109-5618, USA.
Margaret PlankDepartment of Human Genetics, University of Michigan, Ann Arbor, MI, 48109-5618, USA.
Christen M FreiDepartment of Human Genetics, University of Michigan, Ann Arbor, MI, 48109-5618, USA.
Michael J DavisDepartment of Microbiology and Immunology, University of Michigan, Ann Arbor, MI, 48109-5618, USA.
Brian GregorkaDepartment of Microbiology and Immunology, University of Michigan, Ann Arbor, MI, 48109-5618, USA.
Joel A SwansonDepartment of Microbiology and Immunology, University of Michigan, Ann Arbor, MI, 48109-5618, USA.ORCID http://orcid.org/0000-0003-0900-8212
Miriam H MeislerDepartment of Human Genetics, University of Michigan, Ann Arbor, MI, 48109-5618, USA.
Jacob O KitzmanDepartment of Human Genetics, University of Michigan, Ann Arbor, MI, 48109-5618, USA. kitzmanj@umich.edu.
University of Michigan · US

Funding

INSERTIONAL MUTANTS AND DEVELOPMENT IN TRANSGENIC MICER01GM024872 · NIGMS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI MEISLER, MIRIAM H · 1985 to 2024
$10.7M
Cellular Biotechnology Training Program (CBTP) - Years 31-35T32GM145304 · NIGMS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI Guizhi Zhu · 2022 to 2026
$2.6M
The Regulation of MacropinocytosisR35GM131720 · NIGMS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI SWANSON, JOEL A · 2019 to 2023
$2.4M
NIGMS NIH HHS R01 GM024872NIGMS NIH HHS R35 GM131720NIGMS NIH HHS T32 GM145304
6 · The paper itself

Abstract

Defective biosynthesis of the phospholipid PI(3,5)P

Indexed as

Clustered Regularly Interspaced Short Palindromic RepeatsGene Knockout TechniquesGenetic Association StudiesGenetic TestingAnimalsBase SequenceBiomarkersCell LineCellular MicroenvironmentFibroblastsFlavoproteinsGene ExpressionHigh-Throughput Screening AssaysHydrogen-Ion ConcentrationImmunophenotypingLysosomesBiomarkersFig4 protein, mouseFlavoproteinsPhosphoinositide Phosphatases

Identifiers

PMID31270356
PMCPMC6610096
OpenAlexW2954121280

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.