Evidence map›Paper›PMID 31270234›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2019

Cellular responses to reactive oxygen species are predicted from molecular mechanisms.

Laurence Yang, Nathan Mih, Amitesh Anand, Joon Ho Park, Justin Tan, James T Yurkovich, Jonathan M Monk, Colton J Lloyd, Troy E Sandberg, Sang Woo Seo and 11 more

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 45 papers.

0numbers the graph read from it
0cells of the map it votes in
45citing papers in PubMed
5.0field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

45 citing papers in PubMed, 126 citations in OpenAlex.

  1. Understanding Iron and Oxidative Stress Response inbioRxiv : the preprint server for biology · 2026
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  11. Antimicrobial activity and mechanism of anti-MRSA of phloroglucinol derivatives.Daru : journal of Faculty of Pharmacy, Tehran University of Medical Sciences · 2024
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

21 authors at 2 institutions in 2 countries.

Laurence YangDepartment of Bioengineering, University of California San Diego, La Jolla, CA 92093; lyang@eng.ucsd.edu palsson@ucsd.edu.
Nathan MihDepartment of Nanoengineering, University of California San Diego, La Jolla, CA 92093.ORCID 0000-0002-4302-9052
Amitesh AnandDepartment of Bioengineering, University of California San Diego, La Jolla, CA 92093.ORCID 0000-0002-3720-4301
Joon Ho ParkDepartment of Nanoengineering, University of California San Diego, La Jolla, CA 92093.
Justin TanDepartment of Bioengineering, University of California San Diego, La Jolla, CA 92093.
James T YurkovichDepartment of Bioengineering, University of California San Diego, La Jolla, CA 92093.ORCID 0000-0002-9403-509X
Jonathan M MonkDepartment of Bioengineering, University of California San Diego, La Jolla, CA 92093.
Colton J LloydDepartment of Bioengineering, University of California San Diego, La Jolla, CA 92093.
Troy E SandbergDepartment of Bioengineering, University of California San Diego, La Jolla, CA 92093.ORCID 0000-0003-3240-3659
Sang Woo SeoDepartment of Bioengineering, University of California San Diego, La Jolla, CA 92093.
Donghyuk KimDepartment of Bioengineering, University of California San Diego, La Jolla, CA 92093.
Anand V SastryDepartment of Bioengineering, University of California San Diego, La Jolla, CA 92093.
Patrick PhaneufBioinformatics and Systems Biology Program, University of California San Diego, La Jolla, CA 92093.
Ye GaoDivision of Biological Sciences, University of California San Diego, La Jolla, CA 92093.
Jared T BroddrickDivision of Biological Sciences, University of California San Diego, La Jolla, CA 92093.
Ke ChenDepartment of Bioengineering, University of California San Diego, La Jolla, CA 92093.
David HeckmannDepartment of Bioengineering, University of California San Diego, La Jolla, CA 92093.
Richard SzubinDepartment of Bioengineering, University of California San Diego, La Jolla, CA 92093.
Ying HefnerDepartment of Bioengineering, University of California San Diego, La Jolla, CA 92093.
Adam M FeistDepartment of Bioengineering, University of California San Diego, La Jolla, CA 92093.
Bernhard O PalssonDepartment of Bioengineering, University of California San Diego, La Jolla, CA 92093; lyang@eng.ucsd.edu palsson@ucsd.edu.
University of California San Diego · USNovo Nordisk Foundation · DK

Funding

GENOMICALLY BASED MODELS FOR ANTIBIOTIC DEVELOPMENTR01GM057089 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI PALSSON, BERNHARD O · 1998 to 2021
$6.9M
NIGMS NIH HHS R01 GM057089
6 · The paper itself

Abstract

Catalysis using iron-sulfur clusters and transition metals can be traced back to the last universal common ancestor. The damage to metalloproteins caused by reactive oxygen species (ROS) can prevent cell growth and survival when unmanaged, thus eliciting an essential stress response that is universal and fundamental in biology. Here we develop a computable multiscale description of the ROS stress response in

Indexed as

CatalysisCell ProliferationEscherichia coliGene Expression RegulationHydrogen PeroxideIronIron-Sulfur ProteinsMetalloproteinsOperonOxidative StressReactive Oxygen SpeciesSulfurHydrogen PeroxideIronIron-Sulfur ProteinsMetalloproteinsReactive Oxygen SpeciesSulfurgenome-scale modelmetabolismoxidative stressprotein expressionreactive oxygen species

Identifiers

PMID31270234
PMCPMC6628673
OpenAlexW2954205175

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.