Evidence map›Paper›PMID 31270138›Full record

ArticleThe Journal of cell biology2019

Superresolution microscopy reveals linkages between ribosomal DNA on heterologous chromosomes.

Tamara A Potapova, Jay R Unruh, Zulin Yu, Giulia Rancati, Hua Li, Martha R Stampfer, Jennifer L Gerton

Open access · hybridAbstract read
In one paragraph

Article in The Journal of cell biology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 37 papers.

0numbers the graph read from it
0cells of the map it votes in
37citing papers in PubMed
8.8field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

37 citing papers in PubMed, 56 citations in OpenAlex.

  1. Article
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  7. Review
  8. Epigenetic control and inheritance of rDNA arrays.bioRxiv : the preprint server for biology · 2024
    Article
  9. Article
  10. Article
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  13. Co-occurrence of acrocentric chromosome associations with dicentric chromosomes in irradiated human lymphocytes.Strahlentherapie und Onkologie : Organ der Deutschen Rontgengesellschaft ... [et al] · 2023
    Article
  14. Article
  15. Review
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  17. Under the magnifying glass: The ups and downs of rDNA copy number.Seminars in cell & developmental biology · 2023
    Review
  18. Article
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  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 2 countries.

Tamara A PotapovaStowers Institute for Medical Research, Kansas City, MO.
Jay R UnruhStowers Institute for Medical Research, Kansas City, MO.ORCID 0000-0003-3077-4990
Zulin YuStowers Institute for Medical Research, Kansas City, MO.
Giulia RancatiInstitute of Medical Biology, Agency for Science, Technology and Research, Singapore.ORCID 0000-0003-0835-0139
Hua LiStowers Institute for Medical Research, Kansas City, MO.
Martha R StampferBiological Systems and Engineering Division, Lawrence Berkeley National Laboratory, Berkeley, CA.ORCID 0000-0002-3801-5086
Jennifer L GertonStowers Institute for Medical Research, Kansas City, MO jeg@stowers.org.ORCID 0000-0003-0743-3637
Stowers Institute for Medical Research · USAgency for Science, Technology and Research · SGLawrence Berkeley National Laboratory · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The spatial organization of the genome is enigmatic. Direct evidence of physical contacts between chromosomes and their visualization at nanoscale resolution has been limited. We used superresolution microscopy to demonstrate that ribosomal DNA (rDNA) can form linkages between chromosomes. We observed rDNA linkages in many different human cell types and demonstrated their resolution in anaphase. rDNA linkages are coated by the transcription factor UBF and their formation depends on UBF, indicating that they regularly occur between transcriptionally active loci. Overexpression of c-Myc increases rDNA transcription and the frequency of rDNA linkages, further suggesting that their formation depends on active transcription. Linkages persist in the absence of cohesion, but inhibition of topoisomerase II prevents their resolution in anaphase. We propose that linkages are topological intertwines occurring between transcriptionally active rDNA loci spatially colocated in the same nucleolar compartment. Our findings suggest that active DNA loci engage in physical interchromosomal connections that are an integral and pervasive feature of genome organization.

Indexed as

AnaphaseAnimalsCell LineCell NucleolusChromosomes, HumanDNA, RibosomalDNA Topoisomerases, Type IIHumansHybrid CellsInduced Pluripotent Stem CellsMiceMicroscopyPol1 Transcription Initiation Complex ProteinsPolyploidyProtein BindingProto-Oncogene Proteins c-mycDNA, RibosomalDNA Topoisomerases, Type IIPol1 Transcription Initiation Complex ProteinsProto-Oncogene Proteins c-mycTelomeraseTopoisomerase Inhibitorstranscription factor UBF

Identifiers

PMID31270138
PMCPMC6683752
OpenAlexW2954087010

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.