Evidence map›Paper›PMID 31269894›Full record

ArticleBMC evolutionary biology2019

An evolutionary approach to recover genes predominantly expressed in the testes of the zebrafish, chicken and mouse.

Sophie Fouchécourt, Floriane Picolo, Sébastien Elis, Charlotte Lécureuil, Aurore Thélie, Marina Govoroun, Mégane Brégeon, Pascal Papillier, Jean-Jacques Lareyre, Philippe Monget

Open access · goldAbstract read
In one paragraph

Article in BMC evolutionary biology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
1.6field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 15 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 2 institutions in 1 country.

Sophie FouchécourtPRC, CNRS, IFCE, INRA, Université de Tours, 37380, Nouzilly, France. sophie.fouchecourt@inra.fr.ORCID 0000-0001-6923-6220
Floriane PicoloPRC, CNRS, IFCE, INRA, Université de Tours, 37380, Nouzilly, France.
Sébastien ElisPRC, CNRS, IFCE, INRA, Université de Tours, 37380, Nouzilly, France.
Charlotte LécureuilInstitut de Recherche sur la Biologie de l'Insecte (IRBI), UMR 7261, CNRS-Université de Tours, 37200, Tours, France.
Aurore ThéliePRC, CNRS, IFCE, INRA, Université de Tours, 37380, Nouzilly, France.
Marina GovorounPRC, CNRS, IFCE, INRA, Université de Tours, 37380, Nouzilly, France.
Mégane BrégeonPRC, CNRS, IFCE, INRA, Université de Tours, 37380, Nouzilly, France.
Pascal PapillierPRC, CNRS, IFCE, INRA, Université de Tours, 37380, Nouzilly, France.
Jean-Jacques LareyreINRA, UPR 1037, Laboratory of Fish Physiology and Genomics (LPGP), BIOSIT, OUEST-genopole, Bât. 16, Campus de Beaulieu, cedex, 35042, Rennes, France.
Philippe MongetPRC, CNRS, IFCE, INRA, Université de Tours, 37380, Nouzilly, France.
Université de Tours · FRLaboratoire de Physiologie et Génomique des Poissons · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundPreviously, we have demonstrated that genes involved in ovarian function are highly conserved throughout evolution. In this study, we aimed to document the conservation of genes involved in spermatogenesis from flies to vertebrates and their expression profiles in vertebrates.

resultsWe retrieved 379 Drosophila melanogaster genes that are functionally involved in male reproduction according to their mutant phenotypes and listed their vertebrate orthologs. 83% of the fly genes have at least one vertebrate ortholog for a total of 625 mouse orthologs. This conservation percentage is almost twice as high as the 42% rate for the whole fly genome and is similar to that previously found for genes preferentially expressed in ovaries. Of the 625 mouse orthologs, we selected 68 mouse genes of interest, 42 of which exhibited a predominant relative expression in testes and 26 were their paralogs. These 68 mouse genes exhibited 144 and 60 orthologs in chicken and zebrafish, respectively, gathered in 28 groups of paralogs. Almost two thirds of the chicken orthologs and half of the zebrafish orthologs exhibited a relative expression ≥50% in testis. Finally, our focus on functional in silico data demonstrated that most of these genes were involved in the germ cell process, primarily in structure elaboration/maintenance and in acid nucleic metabolism.

conclusionOur work confirms that the genes involved in germ cell development are highly conserved across evolution in vertebrates and invertebrates and display a high rate of conservation of preferential testicular expression among vertebrates. Among the genes highlighted in this study, three mouse genes (Lrrc46, Pabpc6 and Pkd2l1) have not previously been described in the testes, neither their zebrafish nor chicken orthologs. The phylogenetic approach developed in this study finally allows considering new testicular genes for further fundamental studies in vertebrates, including model species (mouse and zebrafish).

Indexed as

Evolution, MolecularAnimalsChickensDrosophila melanogasterMaleMicePhylogenySpermatogenesisTestisZebrafishConservationGene evolutionSpermatogenesisTestis

Identifiers

PMID31269894
PMCPMC6609395
OpenAlexW2954971861

What OpenQuestion holds

Textmetadata
LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.