Evidence map›Paper›PMID 31269646›Full record

ArticleInternational journal of molecular sciences2019

Analysis of Mitochondrial DNA Polymorphisms in the Human Cell Lines HepaRG and SJCRH30.

Matthew J Young, Anitha D Jayaprakash, Carolyn K J Young

Abstract read
In one paragraph

Article in International journal of molecular sciences, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
  2. mtDNA and Mitochondrial Stress Signaling in Human Diseases: A Special Issue.International journal of molecular sciences · 2020
    Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Matthew J YoungDepartment of Biochemistry and Molecular Biology, Southern Illinois University School of Medicine, Carbondale, Illinois 62901, USA. matthew.young@siu.edu.
Anitha D JayaprakashGirihlet Inc., Oakland, CA 94609, USA.
Carolyn K J YoungDepartment of Biochemistry and Molecular Biology, Southern Illinois University School of Medicine, Carbondale, Illinois 62901, USA.

Funding

The Roles of Polymerase Gamma Accessory Subunit Gene Mutations in Human Disease.R00ES022638 · NIEHS · SOUTHERN ILLINOIS UNIVERSITY CARBONDALE · PI YOUNG, MATTHEW J · 2016 to 2018
$747k
National Institute of Environmental Health Sciences 5R00ES022638-04NIEHS NIH HHS R00 ES022638School of Medicine, Southern Illinois University Start-up funds
6 · The paper itself

Abstract

The mitochondrial DNA (mtDNA) sequences of two commonly used human cell lines, HepaRG and SJCRH30, were determined. HepaRG originates from a liver tumor obtained from a patient with hepatocarcinoma and hepatitis C while SJCRH30 originates from a rhabdomyosarcoma patient tumor. In comparison to the revised Cambridge Reference Sequence, HepaRG and SJCRH30 mtDNA each contain 14 nucleotide variations. In addition to an insertion of a cytosine at position 315 (315insC), the mtDNA sequences from both cell types share six common polymorphisms. Heteroplasmic variants were identified in both cell types and included the identification of the 315insC mtDNA variant at 42 and 75% heteroplasmy in HepaRG and SJCRH30, respectively. Additionally, a novel heteroplasmic G13633A substitution in the HepaRG

Indexed as

Polymorphism, GeneticCarcinoma, HepatocellularCell Line, TumorDNA, MitochondrialHepatitis CHigh-Throughput Nucleotide SequencingHumansLiver NeoplasmsMitochondriaRhabdomyosarcomaSequence Analysis, DNADNA, Mitochondrialcancer-derived cell linesHepaRGhepatocarcinomahuman mitochondrial DNA (mtDNA)MseekmtDNA heteroplasmymtDNA homoplasmynext-generation sequencingrhabdomyosarcomaSJCRH30

Identifiers

PMID31269646
PMCPMC6651321

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.