Evidence map›Paper›PMID 31269435›Full record

ArticleCell reports2019

Ultra-Sensitive TP53 Sequencing for Cancer Detection Reveals Progressive Clonal Selection in Normal Tissue over a Century of Human Lifespan.

Jesse J Salk, Kaitlyn Loubet-Senear, Elisabeth Maritschnegg, Charles C Valentine, Lindsey N Williams, Jacob E Higgins, Reinhard Horvat, Adriaan Vanderstichele, Daniela Nachmanson, Kathryn T Baker and 8 more

Open access · goldAbstract read
In one paragraph

Article in Cell reports, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 59 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
59citing papers in PubMed, 1 pooled it
5.2field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

59 citing papers in PubMed, 1 synthesis or guideline pooled it, 103 citations in OpenAlex.

  1. Pooled it
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  8. Detection of mutations: from Ames test to duplex sequencing.Frontiers in molecular biosciences · 2026
    Review
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  18. CarcSeq detection of lorcaserin-induced clonal expansion of Pik3ca H1047R mutants in rat mammary tissue.Toxicological sciences : an official journal of the Society of Toxicology · 2024
    Article
  19. SomaticCells · 2024
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

18 authors at 7 institutions in 5 countries.

Jesse J SalkDepartment of Medicine, Division of Medical Oncology, University of Washington, Seattle, WA 98195, USA; TwinStrand Biosciences, Seattle, WA 98121, USA.
Kaitlyn Loubet-SenearDepartment of Pathology, University of Washington, Seattle, WA 98195, USA.
Elisabeth MaritschneggMolecular Oncology Group, Department of Obstetrics and Gynecology, Comprehensive Cancer Center-Gynecologic Cancer Unit, Medical University of Vienna, Vienna, Austria.
Charles C ValentineTwinStrand Biosciences, Seattle, WA 98121, USA.
Lindsey N WilliamsTwinStrand Biosciences, Seattle, WA 98121, USA.
Jacob E HigginsTwinStrand Biosciences, Seattle, WA 98121, USA.
Reinhard HorvatDepartment of Pathology, Medical University of Vienna, Vienna, Austria.
Adriaan VandersticheleDepartment of Gynecologic Oncology, Leuven Cancer Institute, University Hospitals Leuven, Katholieke Universiteit, Leuven, Belgium.
Daniela NachmansonDepartment of Pathology, University of Washington, Seattle, WA 98195, USA.
Kathryn T BakerDepartment of Pathology, University of Washington, Seattle, WA 98195, USA.
Mary J EmondDepartment of Statistics, University of Washington, Seattle, WA 98195, USA.
Emily LoterDepartment of Pathology, Seattle Children's Hospital, Seattle, WA 98105, USA.
Maria TretiakovaDepartment of Pathology, University of Washington, Seattle, WA 98195, USA.
Thierry SoussiSorbonne Université, UPMC Université Paris 06, 75005 Paris, France; Department of Oncology-Pathology, Karolinska Institutet, Stockholm, Sweden; INSERM, U1138, Centre de Recherche des Cordeliers, Paris, France.
Lawrence A LoebDepartment of Pathology, University of Washington, Seattle, WA 98195, USA.
Robert ZeillingerMolecular Oncology Group, Department of Obstetrics and Gynecology, Comprehensive Cancer Center-Gynecologic Cancer Unit, Medical University of Vienna, Vienna, Austria.
Paul SpeiserMolecular Oncology Group, Department of Obstetrics and Gynecology, Comprehensive Cancer Center-Gynecologic Cancer Unit, Medical University of Vienna, Vienna, Austria.
Rosa Ana RisquesDepartment of Pathology, University of Washington, Seattle, WA 98195, USA. Electronic address: rrisques@uw.edu.
University of Washington · USComprehensive Cancer Center Vienna · ATInserm · FRKU Leuven · BEMedical University of Vienna · ATSeattle Children's Hospital · USUniversity of Washington Medical Center · US

Funding

Tumor mutation signaturesP01CA077852 · NCI · UNIVERSITY OF WASHINGTON · PI MONNAT, RAYMOND J · 1999 to 2019
$26.0M
TRAINING IN CANCER BIOLOGY &TRANSPLANTATIONT32CA009515 · NCI · UNIVERSITY OF WASHINGTON · PI NANCY ELLEN DAVIDSON, Effie W Petersdorf · 1985 to 2026
$16.2M
Early Detection of Ovarian Cancer Using Uterine Lavage and Duplex SequencingR44CA221426 · NCI · TWINSTRAND BIOSCIENCES, INC. · PI SALK, JESSE J · 2017 to 2020
$2.3M
Mutator Phenotype in Colon CancerR01CA193649 · NCI · UNIVERSITY OF WASHINGTON · PI LOEB, LAWRENCE A · 2016 to 2019
$1.4M
Mitochondrial biomarkers for early detection of cancer in ulcerative colitisR01CA181308 · NCI · UNIVERSITY OF WASHINGTON · PI RISQUES, ROSA ANA · 2014 to 2018
$1.4M
NCI NIH HHS P01 CA077852NCI NIH HHS R01 CA181308NCI NIH HHS R01 CA193649NCI NIH HHS R44 CA221426NCI NIH HHS T32 CA009515
6 · The paper itself

Abstract

High-accuracy next-generation DNA sequencing promises a paradigm shift in early cancer detection by enabling the identification of mutant cancer molecules in minimally invasive body fluid samples. We demonstrate 80% sensitivity for ovarian cancer detection using ultra-accurate Duplex Sequencing to identify TP53 mutations in uterine lavage. However, in addition to tumor DNA, we also detect low-frequency TP53 mutations in nearly all lavages from women with and without cancer. These mutations increase with age and share the selection traits of clonal TP53 mutations commonly found in human tumors. We show that low-frequency TP53 mutations exist in multiple healthy tissues, from newborn to centenarian, and progressively increase in abundance and pathogenicity with older age across tissue types. Our results illustrate that subclonal cancer evolutionary processes are a ubiquitous part of normal human aging, and great care must be taken to distinguish tumor-derived from age-associated mutations in high-sensitivity clinical cancer diagnostics.

Indexed as

AdultAgedAged, 80 and overAgingCell-Free Nucleic AcidsClonal EvolutionDatabases, GeneticDNA, NeoplasmFemaleHigh-Throughput Nucleotide SequencingHumansInfant, NewbornMiddle AgedMutationOvarian NeoplasmsSelection, GeneticCell-Free Nucleic AcidsDNA, NeoplasmTP53 protein, humanTumor Suppressor Protein p53agingDuplex Sequencingearly detectiongynecologic oncologyhigh-grade serous ovarian cancernext-generation sequencingsomatic mutationsTP53, clonal evolutionuterine lavage

Identifiers

PMID31269435
PMCPMC6639023
OpenAlexW2954856035

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.