Evidence map›Paper›PMID 31268607›Full record

ArticleThe EMBO journal2019

Coupling of ATPase activity, microtubule binding, and mechanics in the dynein motor domain.

Stefan Niekamp, Nicolas Coudray, Nan Zhang, Ronald D Vale, Gira Bhabha

Open access · hybridAbstract read
In one paragraph

Article in The EMBO journal, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
1.9field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 28 citations in OpenAlex.

  1. Article
  2. Review
  3. The mechanochemical cycle of reactive full-length human dynein 1.Nature structural & molecular biology · 2025
    Article
  4. Article
  5. Review
  6. Review
  7. A novelFrontiers in neurology · 2024
    Article
  8. Article
  9. Article
  10. Article
  11. Specialization of the photoreceptor transcriptome byProceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  12. Article
  13. Review
  14. Review
  15. Article
  16. Article
  17. Structure and Mechanics of Dynein Motors.Annual review of biophysics · 2021
    Review
  18. Bioenergetics of theBiomolecules · 2020
    Article
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Stefan NiekampDepartment of Cellular and Molecular Pharmacology, Howard Hughes Medical Institute, University of California San Francisco, San Francisco, CA, USA.ORCID 0000-0002-2000-8531
Nicolas CoudrayDepartment of Cell Biology, Skirball Institute of Biomolecular Medicine, New York University School of Medicine, New York, NY, USA.
Nan ZhangDepartment of Cellular and Molecular Pharmacology, Howard Hughes Medical Institute, University of California San Francisco, San Francisco, CA, USA.
Ronald D ValeDepartment of Cellular and Molecular Pharmacology, Howard Hughes Medical Institute, University of California San Francisco, San Francisco, CA, USA.
Gira BhabhaDepartment of Cell Biology, Skirball Institute of Biomolecular Medicine, New York University School of Medicine, New York, NY, USA.ORCID 0000-0003-0624-6178
Howard Hughes Medical Institute · USNew York University · US

Funding

TRD #3: An automated and streamlined pipeline for in-situ molecular microscopyP41GM103310 · NIGMS · SCRIPPS RESEARCH INSTITUTE, THE · PI DE MARCO, ALEX, KIEFT, JEFFREY S · 2012 to 2021
$14.7M
Structure and mechanism of the dynein motorR01GM097312 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI VALE, RONALD D · 2011 to 2016
$1.5M
Structure and mechanism of cytoplasmic and axonemal dyneinsR00GM112982 · NIGMS · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI BHABHA, GIRA · 2017 to 2019
$747k
Damon Runyon Cancer Research Foundation (Cancer Research Fund of the Damon Runyon-Walter Winchell Foundation) DFS-20-16HHS | NIH | National Institute of General Medical Sciences (NIGMS) GM103310HHS | NIH | National Institute of General Medical Sciences (NIGMS) R00GM112982HHS | NIH | National Institute of General Medical Sciences (NIGMS) R01GM097312Howard Hughes Medical Institute (HHMI)NIGMS NIH HHS P41 GM103310NIGMS NIH HHS R00 GM112982NIGMS NIH HHS R01 GM097312Simons Foundation 349247
6 · The paper itself

Abstract

The movement of a molecular motor protein along a cytoskeletal track requires communication between enzymatic, polymer-binding, and mechanical elements. Such communication is particularly complex and not well understood in the dynein motor, an ATPase that is comprised of a ring of six AAA domains, a large mechanical element (linker) spanning over the ring, and a microtubule-binding domain (MTBD) that is separated from the AAA ring by a ~ 135 Å coiled-coil stalk. We identified mutations in the stalk that disrupt directional motion, have microtubule-independent hyperactive ATPase activity, and nucleotide-independent low affinity for microtubules. Cryo-electron microscopy structures of a mutant that uncouples ATPase activity from directional movement reveal that nucleotide-dependent conformational changes occur normally in one-half of the AAA ring, but are disrupted in the other half. The large-scale linker conformational change observed in the wild-type protein is also inhibited, revealing that this conformational change is not required for ATP hydrolysis. These results demonstrate an essential role of the stalk in regulating motor activity and coupling conformational changes across the two halves of the AAA ring.

Indexed as

AcetyltransferasesAdenosine TriphosphateCryoelectron MicroscopyMicrotubulesModels, MolecularMutationProtein BindingProtein ConformationProtein DomainsSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsAcetyltransferasesAdenosine TriphosphateSaccharomyces cerevisiae Proteinscryo-electron microscopydyneinmicrotubulemotilitymotor proteins

Identifiers

PMID31268607
PMCPMC6600642
OpenAlexW2948019509

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.