Evidence map›Paper›PMID 31268215›Full record

ReviewHuman mutation2019

Mutation update on ACAT1 variants associated with mitochondrial acetoacetyl-CoA thiolase (T2) deficiency.

Elsayed Abdelkreem, Rajesh K Harijan, Seiji Yamaguchi, Rikkert K Wierenga, Toshiyuki Fukao

Open access · hybridAbstract readReview
In one paragraph

Review in Human mutation, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
3.4field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 47 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 4 institutions in 4 countries.

Elsayed AbdelkreemDepartment of Pediatrics, Graduate School of Medicine, Gifu University, Gifu, Japan.ORCID 0000-0002-8976-2989
Rajesh K HarijanDepartment of Biochemistry, Albert Einstein College of Medicine, New York, New York.
Seiji YamaguchiDepartment of Pediatrics, Shimane University School of Medicine, Izumo, Japan.
Rikkert K WierengaBiocenter Oulu and FBMM, University of Oulu, Oulu, Finland.
Toshiyuki FukaoDepartment of Pediatrics, Graduate School of Medicine, Gifu University, Gifu, Japan.
Gifu University · JPAlbert Einstein College of Medicine · USBiocenter Finland · FIShimane University · JP

Funding

AMED JP17ek0109276Grant-in-Aid for Scientific Research from the Ministry of Education, Culture, Sports, Science and Technology of Japan 16K09962Health and Labor Sciences Research Grants H29-nanchitou(nan)-ippan-051
6 · The paper itself

Abstract

Mitochondrial acetoacetyl-CoA thiolase (T2, encoded by the ACAT1 gene) deficiency is an inherited disorder of ketone body and isoleucine metabolism. It typically manifests with episodic ketoacidosis. The presence of isoleucine-derived metabolites is the key marker for biochemical diagnosis. To date, 105 ACAT1 variants have been reported in 149 T2-deficient patients. The 56 disease-associated missense ACAT1 variants have been mapped onto the crystal structure of T2. Almost all these missense variants concern residues that are completely or partially buried in the T2 structure. Such variants are expected to cause T2 deficiency by having lower in vivo T2 activity because of lower folding efficiency and/or stability. Expression and activity data of 30 disease-associated missense ACAT1 variants have been measured by expressing them in human SV40-transformed fibroblasts. Only two variants (p.Cys126Ser and p.Tyr219His) appear to have equal stability as wild-type. For these variants, which are inactive, the side chains point into the active site. In patients with T2 deficiency, the genotype does not correlate with the clinical phenotype but exerts a considerable effect on the biochemical phenotype. This could be related to variable remaining residual T2 activity in vivo and has important clinical implications concerning disease management and newborn screening.

Indexed as

Genetic Predisposition to DiseaseMutationAcetyl-CoA C-AcetyltransferaseAcetyl-CoA C-AcyltransferaseAmino Acid Metabolism, Inborn ErrorsAnimalsGene Expression Regulation, EnzymologicGenetic Association StudiesGenetic VariationHumansMetabolic Networks and PathwaysModels, MolecularPhenotypeProtein BindingProtein ConformationProtein Interaction Domains and MotifsACAT1 protein, humanAcetyl-CoA C-AcetyltransferaseAcetyl-CoA C-AcyltransferaseACAT1genotype-phenotype correlationmutationsstructureT2-deficiencyvariantsβ-ketothiolase deficiency

Identifiers

PMID31268215
PMCPMC6790690
OpenAlexW2954606006

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.