Evidence map›Paper›PMID 31267711›Full record

ArticleEMBO reports2019

Requirements for multivalent Yb body assembly in transposon silencing in Drosophila.

Shigeki Hirakata, Hirotsugu Ishizu, Aoi Fujita, Yumiko Tomoe, Mikiko C Siomi

Open access · bronzeAbstract read
In one paragraph

Article in EMBO reports, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 25 papers.

0numbers the graph read from it
0cells of the map it votes in
25citing papers in PubMed
5.8field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

25 citing papers in PubMed, 38 citations in OpenAlex.

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  16. piRNAs as Modulators of Disease Pathogenesis.International journal of molecular sciences · 2021
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Shigeki HirakataDepartment of Biological Sciences, Graduate School of Science, The University of Tokyo, Tokyo, Japan.
Hirotsugu IshizuDepartment of Biological Sciences, Graduate School of Science, The University of Tokyo, Tokyo, Japan.
Aoi FujitaDepartment of Biological Sciences, Graduate School of Science, The University of Tokyo, Tokyo, Japan.
Yumiko TomoeDepartment of Biological Sciences, Graduate School of Science, The University of Tokyo, Tokyo, Japan.
Mikiko C SiomiDepartment of Biological Sciences, Graduate School of Science, The University of Tokyo, Tokyo, Japan.ORCID 0000-0002-6149-4396
The University of Tokyo · JP

Funding

MEXT|Japan Society for the Promotion of Science (JSPS) xMinistry of Education, Culture, Sports, Science and Technology (MEXT)
6 · The paper itself

Abstract

Female sterile (1) Yb (Yb) is a primary component of Yb bodies, perinuclear foci considered to be the site of PIWI-interacting RNA (piRNA) biogenesis in Drosophila ovarian somatic cells (OSCs). Yb consists of three domains: Helicase C-terminal (Hel-C), RNA helicase, and extended Tudor (eTud) domains. We previously showed that the RNA helicase domain is necessary for Yb-RNA interaction, Yb body formation, and piRNA biogenesis. Here, we investigate the functions of Hel-C and eTud and reveal that Hel-C is dedicated to Yb-Yb homotypic interaction, while eTud is necessary for Yb-RNA association, as is the RNA helicase domain. All of these domains are indispensable for Yb body formation and transposon-repressing piRNA production. Strikingly, however, genic piRNAs unrelated to transposon silencing are produced in OSCs where Yb bodies are disassembled. We also reveal that Yb bodies are liquid-like multivalent condensates whose assembly depends on Yb-Yb homotypic interaction and Yb binding particularly with flamenco RNA transcripts, the source of transposon-repressing piRNAs. New insights into Yb body assembly and biological relevance of Yb bodies in transposon silencing have emerged.

Indexed as

DNA Transposable ElementsGene SilencingProtein MultimerizationAnimalsDrosophila melanogasterDrosophila ProteinsFemaleOvaryProtein BindingProtein DomainsRNA, Small InterferingDNA Transposable ElementsDrosophila Proteinsfs(1)Yb protein, DrosophilaRNA, Small Interferingfemale sterile (1) Ybliquid-liquid phase separationpiRNAtransposonYb body

Identifiers

PMID31267711
PMCPMC6607011
OpenAlexW2942638147

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.