Evidence map›Paper›PMID 31267591›Full record

ArticleThe EMBO journal2019

Phase separation of 53BP1 determines liquid-like behavior of DNA repair compartments.

Sinan Kilic, Aleksandra Lezaja, Marco Gatti, Eliana Bianco, Jone Michelena, Ralph Imhof, Matthias Altmeyer

Open access · bronzeAbstract read
In one paragraph

Article in The EMBO journal, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 272 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
272citing papers in PubMed, 1 pooled it
18.8field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

272 citing papers in PubMed, 1 synthesis or guideline pooled it, 439 citations in OpenAlex.

  1. Pooled it
  2. Review
  3. Review
  4. RSF1-Dependent PAR Turnover Promotes 53BP1 Liquid Condensate Formation at DNA Damage Sites.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2026
    Article
  5. Article
  6. The Polymers of Life: Exploring Cellular Function Through Polymer Concepts.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2026
    Review
  7. Chemical reviews · 2026
    Review
  8. Review
  9. [Mechanisms of RNA-binding protein phase separation in steroid-associated necrosis of the femoral head].Zhong nan da xue xue bao. Yi xue ban = Journal of Central South University. Medical sciences · 2026
    Review
  10. Review
  11. Review
  12. Review
  13. Investigating Phase Separation in Genome Folding via Multiscale Computational Modeling.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2026
    Review
  14. Article
  15. Article
  16. Article
  17. Article
  18. Review
  19. Article
  20. Measuring bridging forces in protein-DNA condensates.Proceedings of the National Academy of Sciences of the United States of America · 2026
    Article

212 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

7 authors at 1 institution in 1 country.

Sinan KilicDepartment of Molecular Mechanisms of Disease, University of Zurich, Zurich, Switzerland.ORCID 0000-0001-5009-8884
Aleksandra LezajaDepartment of Molecular Mechanisms of Disease, University of Zurich, Zurich, Switzerland.
Marco GattiDepartment of Molecular Mechanisms of Disease, University of Zurich, Zurich, Switzerland.
Eliana BiancoDepartment of Molecular Mechanisms of Disease, University of Zurich, Zurich, Switzerland.
Jone MichelenaDepartment of Molecular Mechanisms of Disease, University of Zurich, Zurich, Switzerland.
Ralph ImhofDepartment of Molecular Mechanisms of Disease, University of Zurich, Zurich, Switzerland.
Matthias AltmeyerDepartment of Molecular Mechanisms of Disease, University of Zurich, Zurich, Switzerland.ORCID 0000-0003-3780-1170
University of Zurich · CH

Funding

EC | H2020 | H2020 Priority Excellent Science | H2020 European Research Council (ERC) 714326Krebsliga Schweiz (Swiss Cancer League) KFS-4406-02-2018Novartis Stiftung für Medizinisch-BiologischeForschung (Novartis Foundation for Medical-Biological Research) 16B078Schweizerischer Nationalfonds zur Förderung der Wissenschaftlichen Forschung (SNF) 150690Schweizerischer Nationalfonds zur Förderung der Wissenschaftlichen Forschung (SNF) 179057
6 · The paper itself

Abstract

The DNA damage response (DDR) generates transient repair compartments to concentrate repair proteins and activate signaling factors. The physicochemical properties of these spatially confined compartments and their function remain poorly understood. Here, we establish, based on live cell microscopy and CRISPR/Cas9-mediated endogenous protein tagging, that 53BP1-marked repair compartments are dynamic, show droplet-like behavior, and undergo frequent fusion and fission events. 53BP1 assembly, but not the upstream accumulation of γH2AX and MDC1, is highly sensitive to changes in osmotic pressure, temperature, salt concentration and to disruption of hydrophobic interactions. Phase separation of 53BP1 is substantiated by optoDroplet experiments, which further allowed dissection of the 53BP1 sequence elements that cooperate for light-induced clustering. Moreover, we found the tumor suppressor protein p53 to be enriched within 53BP1 optoDroplets, and conditions that disrupt 53BP1 phase separation impair 53BP1-dependent induction of p53 and diminish p53 target gene expression. We thus suggest that 53BP1 phase separation integrates localized DNA damage recognition and repair factor assembly with global p53-dependent gene activation and cell fate decisions.

Indexed as

DNA RepairAdaptor Proteins, Signal TransducingAnimalsCell Cycle ProteinsCell Line, TumorCRISPR-Cas SystemsDogsHistonesHumansLiquid-Liquid ExtractionMadin Darby Canine Kidney CellsMCF-7 CellsOptogeneticsOsmotic PressureStress, PhysiologicalTumor Suppressor p53-Binding Protein 1Adaptor Proteins, Signal TransducingCell Cycle ProteinsH2AX protein, humanHistonesMDC1 protein, humanTP53BP1 protein, humanTP53 protein, humanTumor Suppressor p53-Binding Protein 1Tumor Suppressor Protein p5353BP1DNA damage responsegenome stabilityliquid-liquid phase separationp53

Identifiers

PMID31267591
PMCPMC6694294
OpenAlexW2953749471

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.