Evidence map›Paper›PMID 31266983›Full record

ArticleScientific reports2019

Methylome and transcriptome maps of human visceral and subcutaneous adipocytes reveal key epigenetic differences at developmental genes.

Stephen T Bradford, Shalima S Nair, Aaron L Statham, Susan J van Dijk, Timothy J Peters, Firoz Anwar, Hugh J French, Julius Z H von Martels, Brodie Sutcliffe, Madhavi P Maddugoda and 16 more

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed, 1 pooled it
1.6field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 1 synthesis or guideline pooled it, 43 citations in OpenAlex.

  1. Pooled it
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  3. Global mapping of RNA NBiomarker research · 2025
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

26 authors at 5 institutions in 2 countries.

Stephen T BradfordEpigenetics Research Laboratory, Genomics and Epigenetics Division, Garvan Institute of Medical Research, Sydney, 2010, New South Wales, Australia.
Shalima S NairEpigenetics Research Laboratory, Genomics and Epigenetics Division, Garvan Institute of Medical Research, Sydney, 2010, New South Wales, Australia.
Aaron L StathamEpigenetics Research Laboratory, Genomics and Epigenetics Division, Garvan Institute of Medical Research, Sydney, 2010, New South Wales, Australia.
Susan J van DijkCSIRO Health & Biosecurity, North Ryde, 2113, New South Wales, Australia.
Timothy J PetersEpigenetics Research Laboratory, Genomics and Epigenetics Division, Garvan Institute of Medical Research, Sydney, 2010, New South Wales, Australia.ORCID http://orcid.org/0000-0003-3690-5293
Firoz AnwarCSIRO Health & Biosecurity, North Ryde, 2113, New South Wales, Australia.ORCID http://orcid.org/0000-0002-4980-0880
Hugh J FrenchEpigenetics Research Laboratory, Genomics and Epigenetics Division, Garvan Institute of Medical Research, Sydney, 2010, New South Wales, Australia.ORCID http://orcid.org/0000-0001-7464-6929
Julius Z H von MartelsEpigenetics Research Laboratory, Genomics and Epigenetics Division, Garvan Institute of Medical Research, Sydney, 2010, New South Wales, Australia.
Brodie SutcliffeCSIRO Health & Biosecurity, North Ryde, 2113, New South Wales, Australia.
Madhavi P MaddugodaEpigenetics Research Laboratory, Genomics and Epigenetics Division, Garvan Institute of Medical Research, Sydney, 2010, New South Wales, Australia.
Michelle PeranecEpigenetics Research Laboratory, Genomics and Epigenetics Division, Garvan Institute of Medical Research, Sydney, 2010, New South Wales, Australia.
Hilal VarinliEpigenetics Research Laboratory, Genomics and Epigenetics Division, Garvan Institute of Medical Research, Sydney, 2010, New South Wales, Australia.
Rosanna ArnoldyEpigenetics Research Laboratory, Genomics and Epigenetics Division, Garvan Institute of Medical Research, Sydney, 2010, New South Wales, Australia.
Michael BuckleyEpigenetics Research Laboratory, Genomics and Epigenetics Division, Garvan Institute of Medical Research, Sydney, 2010, New South Wales, Australia.
Jason P RossCSIRO Health & Biosecurity, North Ryde, 2113, New South Wales, Australia.
Elena ZotenkoEpigenetics Research Laboratory, Genomics and Epigenetics Division, Garvan Institute of Medical Research, Sydney, 2010, New South Wales, Australia.
Jenny Z SongEpigenetics Research Laboratory, Genomics and Epigenetics Division, Garvan Institute of Medical Research, Sydney, 2010, New South Wales, Australia.
Clare StirzakerEpigenetics Research Laboratory, Genomics and Epigenetics Division, Garvan Institute of Medical Research, Sydney, 2010, New South Wales, Australia.
Denis C BauerCSIRO Health & Biosecurity, North Ryde, 2113, New South Wales, Australia.
Wenjia QuEpigenetics Research Laboratory, Genomics and Epigenetics Division, Garvan Institute of Medical Research, Sydney, 2010, New South Wales, Australia.
Michael M SwarbrickCentre for Diabetes, Obesity and Endocrinology, The Westmead Institute, The University of Sydney, Westmead, 2145, New South Wales, Australia.
Helen L LutgersEpigenetics Research Laboratory, Genomics and Epigenetics Division, Garvan Institute of Medical Research, Sydney, 2010, New South Wales, Australia.
Reginald V LordSt. Vincent's Centre for Applied Medical Research, Sydney, 2010, New South Wales, Australia.
Katherine SamarasDepartment of Endocrinology, St Vincent's Hospital, Sydney, 2010, New South Wales, Australia.
Peter L MolloyCSIRO Health & Biosecurity, North Ryde, 2113, New South Wales, Australia. Peter.molloy@csiro.au.ORCID http://orcid.org/0000-0002-7788-3417
Susan J ClarkEpigenetics Research Laboratory, Genomics and Epigenetics Division, Garvan Institute of Medical Research, Sydney, 2010, New South Wales, Australia. s.clark@garvan.org.au.ORCID http://orcid.org/0000-0001-5925-5030
Garvan Institute of Medical Research · AUCSIRO Health and Biosecurity · AUCommonwealth Scientific and Industrial Research Organisation · AUThe University of Sydney · AUUniversity Medical Center Groningen · NL

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Adipocytes support key metabolic and endocrine functions of adipose tissue. Lipid is stored in two major classes of depots, namely visceral adipose (VA) and subcutaneous adipose (SA) depots. Increased visceral adiposity is associated with adverse health outcomes, whereas the impact of SA tissue is relatively metabolically benign. The precise molecular features associated with the functional differences between the adipose depots are still not well understood. Here, we characterised transcriptomes and methylomes of isolated adipocytes from matched SA and VA tissues of individuals with normal BMI to identify epigenetic differences and their contribution to cell type and depot-specific function. We found that DNA methylomes were notably distinct between different adipocyte depots and were associated with differential gene expression within pathways fundamental to adipocyte function. Most striking differential methylation was found at transcription factor and developmental genes. Our findings highlight the importance of developmental origins in the function of different fat depots.

Indexed as

DNA MethylationEpigenesis, GeneticTranscriptomeAdipocytesAdultBinding SitesBody Mass IndexDown-RegulationFemaleGene Expression Regulation, DevelopmentalHumansIntra-Abdominal FatMiddle AgedRegulatory Elements, TranscriptionalSubcutaneous FatTranscription FactorsTranscription Factors

Identifiers

PMID31266983
PMCPMC6606599
OpenAlexW2954566106

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.