Evidence map›Paper›PMID 31266971›Full record

ArticleScientific reports2019

A novel group of avian astroviruses from Neotropical passerine birds broaden the diversity and host range of Astroviridae.

Izaskun Fernández-Correa, Daniel A Truchado, Esperanza Gomez-Lucia, Ana Doménech, Javier Pérez-Tris, Jonas Schmidt-Chanasit, Daniel Cadar, Laura Benítez

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers.

0numbers the graph read from it
0cells of the map it votes in
26citing papers in PubMed
2.9field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

26 citing papers in PubMed, 40 citations in OpenAlex.

  1. Review
  2. TwoViruses · 2025
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 2 countries.

Izaskun Fernández-CorreaDepartment of Genetics, Physiology and Microbiology, Faculty of Biology, Complutense University of Madrid, José Antonio Novais, 12, 28040, Madrid, Spain.
Daniel A TruchadoDepartment of Genetics, Physiology and Microbiology, Faculty of Biology, Complutense University of Madrid, José Antonio Novais, 12, 28040, Madrid, Spain.
Esperanza Gomez-LuciaDepartment of Animal Health, Faculty of Veterinary Medicine, Complutense University of Madrid, Avda. Puerta de Hierro s/n, 28040, Madrid, Spain.
Ana DoménechDepartment of Animal Health, Faculty of Veterinary Medicine, Complutense University of Madrid, Avda. Puerta de Hierro s/n, 28040, Madrid, Spain.
Javier Pérez-TrisDepartment of Biodiversity, Ecology and Evolution, Faculty of Biology, Complutense University of Madrid, José Antonio Novais, 12, 28040, Madrid, Spain.
Jonas Schmidt-ChanasitBernhard-Nocht-Institut fur Tropenmedizin, WHO Collaborating Centre for Arbovirus and Haemorrhagic Fever Reference and Research, National Reference Centre for Tropical Infectious Diseases, Bernhard-Nocht-Strasse 74, 20359, Hamburg, Germany.
Daniel CadarBernhard-Nocht-Institut fur Tropenmedizin, WHO Collaborating Centre for Arbovirus and Haemorrhagic Fever Reference and Research, National Reference Centre for Tropical Infectious Diseases, Bernhard-Nocht-Strasse 74, 20359, Hamburg, Germany.
Laura BenítezDepartment of Genetics, Physiology and Microbiology, Faculty of Biology, Complutense University of Madrid, José Antonio Novais, 12, 28040, Madrid, Spain. lbenitez@ucm.es.
Universidad Complutense de Madrid · ESBernhard Nocht Institute for Tropical Medicine · DEUniversität Hamburg · DE

Funding

BENCH TO CLINIC IN CONCURRENT CHEMORADIATION THERAPYK24CA082117 · NCI · VANDERBILT UNIVERSITY · PI CHOY, HAK · 1999 to 2003
$418k
6 · The paper itself

Abstract

Metagenomics is helping to expand the known diversity of viruses, especially of those with poorly studied hosts in remote areas. The Neotropical region harbors a considerable diversity of avian species that may play a role as both host and short-distance vectors of unknown viruses. Viral metagenomics of cloacal swabs from 50 Neotropical birds collected in French Guiana revealed the presence of four complete astrovirus genomes. They constitute an early diverging novel monophyletic clade within the Avastrovirus phylogeny, representing a putative new astrovirus species (provisionally designated as Avastrovirus 5) according to the International Committee on Taxonomy of Viruses (ICTV) classification criteria. Their genomic organization shares some characteristics with Avastrovirus but also with Mamastrovirus. The pan-astrovirus RT-PCR analysis of the cloacal samples of 406 wild Neotropical birds showed a community-level prevalence of 4.9% (5.1% in passerines, the highest described so far in this order of birds). By screening birds of a remote region, we expanded the known host range of astroviruses to the avian families Cardinalidae, Conopophagidae, Furnariidae, Thamnophilidae, Turdidae and Tyrannidae. Our results provide important first insights into the unexplored viral communities, the ecology, epidemiology and features of host-pathogen interactions that shape the evolution of avastroviruses in a remote Neotropical rainforest.

Indexed as

Host SpecificityAmino Acid SequenceAnimalsAstroviridaeAstroviridae InfectionsCloacaFrench GuianaGenome, ViralMamastrovirusOpen Reading FramesPasseriformesPhylogenyPrevalenceSequence AlignmentViral ProteinsViral Proteins

Identifiers

PMID31266971
PMCPMC6606752
OpenAlexW2956039887

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.