Evidence map›Paper›PMID 31266952›Full record

ArticleNature communications2019

Orthogonal regulation of phytochrome B abundance by stress-specific plastidial retrograde signaling metabolite.

Jishan Jiang, Liping Zeng, Haiyan Ke, Brittenny De La Cruz, Katayoon Dehesh

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
5.5field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 40 citations in OpenAlex.

  1. Review
  2. Review
  3. Article
  4. Review
  5. Article
  6. Metabolite control of enzyme activity links stress to biosynthetic regulation.Proceedings of the National Academy of Sciences of the United States of America · 2026
    Article
  7. Review
  8. Article
  9. Article
  10. Role of calcium in regulating key steps in phytochrome-induced signaling pathways.Physiology and molecular biology of plants : an international journal of functional plant biology · 2023
    Review
  11. Article
  12. Article
  13. Article
  14. Chloroplast ROS and stress signaling.Plant communications · 2022
    Review
  15. Hot topic: Thermosensing in plants.Plant, cell & environment · 2021
    Review
  16. Review
  17. Retrograde Signaling: Understanding the Communication between Organelles.International journal of molecular sciences · 2020
    Review
  18. Article
  19. Article
  20. Uncovering the functional residues ofProceedings of the National Academy of Sciences of the United States of America · 2020
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Jishan JiangDepartment of Botany and Plant Sciences, Institute of Integrative Genome Biology, University of California, Riverside, CA, 92521, USA.ORCID http://orcid.org/0000-0002-0262-9967
Liping ZengDepartment of Botany and Plant Sciences, Institute of Integrative Genome Biology, University of California, Riverside, CA, 92521, USA.
Haiyan KeDepartment of Botany and Plant Sciences, Institute of Integrative Genome Biology, University of California, Riverside, CA, 92521, USA.ORCID http://orcid.org/0000-0001-9365-7922
Brittenny De La CruzDepartment of Botany and Plant Sciences, Institute of Integrative Genome Biology, University of California, Riverside, CA, 92521, USA.
Katayoon DeheshDepartment of Botany and Plant Sciences, Institute of Integrative Genome Biology, University of California, Riverside, CA, 92521, USA. kdehesh@ucr.edu.ORCID http://orcid.org/0000-0002-9312-8032
University of California, Riverside · US

Funding

Defining the Retrograde Plastid-to-Nucleus Stress Signaling PathwayR01GM107311 · NIGMS · UNIVERSITY OF CALIFORNIA RIVERSIDE · PI DEHESH, KATAYOON · 2013 to 2021
$2.5M
National Science Foundation (NSF) IOS-1036491National Science Foundation (NSF) IOS-1352478NIGMS NIH HHS R01 GM107311U.S. Department of Health & Human Services | National Institutes of Health (NIH) R01GM107311
6 · The paper itself

Abstract

Plant survival necessitates constant monitoring of fluctuating light and balancing growth demands with adaptive responses, tasks mediated via interconnected sensing and signaling networks. Photoreceptor phytochrome B (phyB) and plastidial retrograde signaling metabolite methylerythritol cyclodiphosphate (MEcPP) are evolutionarily conserved sensing and signaling components eliciting responses through unknown connection(s). Here, via a suppressor screen, we identify two phyB mutant alleles that revert the dwarf and high salicylic acid phenotypes of the high MEcPP containing mutant ceh1. Biochemical analyses show high phyB protein levels in MEcPP-accumulating plants resulting from reduced expression of phyB antagonists and decreased auxin levels. We show that auxin treatment negatively regulates phyB abundance. Additional studies identify CAMTA3, a MEcPP-activated calcium-dependent transcriptional regulator, as critical for maintaining phyB abundance. These studies provide insights into biological organization fundamentals whereby a signal from a single plastidial metabolite is transduced into an ensemble of regulatory networks controlling the abundance of phyB, positioning plastids at the information apex directing adaptive responses.

Indexed as

ArabidopsisArabidopsis ProteinsErythritolGene Expression Regulation, PlantIndoleacetic AcidsLightPhytochrome BPlastidsSignal TransductionTranscription FactorsArabidopsis ProteinsAT2G22300 protein, ArabidopsisErythritolIndoleacetic Acidsmethyl-D-erythritol 2,4-cyclodiphosphatePHYB protein, ArabidopsisPhytochrome BTranscription Factors

Identifiers

PMID31266952
PMCPMC6606753
OpenAlexW2955811519

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.