Evidence map›Paper›PMID 31266935›Full record

ArticleNature communications2019

Synthetic modeling reveals HOXB genes are critical for the initiation and maintenance of human leukemia.

Manabu Kusakabe, Ann Chong Sun, Kateryna Tyshchenko, Rachel Wong, Aastha Nanda, Claire Shanna, Samuel Gusscott, Elizabeth A Chavez, Alireza Lorzadeh, Alice Zhu and 12 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
0.4field-weighted citation impact, top 38% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 13 citations in OpenAlex.

  1. Article
  2. Article
  3. Identification and validation ofFrontiers in immunology · 2025
    Article
  4. Article
  5. Notch Partners in the Long Journey of T-ALL Pathogenesis.International journal of molecular sciences · 2023
    Review
  6. Article
  7. Article
  8. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

22 authors at 2 institutions in 2 countries.

Manabu KusakabeTerry Fox Laboratory, BC Cancer Agency, Vancouver, V5Z 1L3, BC, Canada.ORCID http://orcid.org/0000-0003-2518-0776
Ann Chong SunTerry Fox Laboratory, BC Cancer Agency, Vancouver, V5Z 1L3, BC, Canada.
Kateryna TyshchenkoTerry Fox Laboratory, BC Cancer Agency, Vancouver, V5Z 1L3, BC, Canada.
Rachel WongTerry Fox Laboratory, BC Cancer Agency, Vancouver, V5Z 1L3, BC, Canada.
Aastha NandaTerry Fox Laboratory, BC Cancer Agency, Vancouver, V5Z 1L3, BC, Canada.
Claire ShannaTerry Fox Laboratory, BC Cancer Agency, Vancouver, V5Z 1L3, BC, Canada.
Samuel GusscottTerry Fox Laboratory, BC Cancer Agency, Vancouver, V5Z 1L3, BC, Canada.
Elizabeth A ChavezLymphoid Cancer Research, BC Cancer Agency, Vancouver, V5Z 1L3, BC, Canada.
Alireza LorzadehDepartment of Microbiology and Immunology, Michael Smith Laboratories, University of British Columbia, Vancouver, V6T 1Z4, BC, Canada.
Alice ZhuDepartment of Microbiology and Immunology, Michael Smith Laboratories, University of British Columbia, Vancouver, V6T 1Z4, BC, Canada.
Ainsleigh HillTerry Fox Laboratory, BC Cancer Agency, Vancouver, V5Z 1L3, BC, Canada.
Stacy HungLymphoid Cancer Research, BC Cancer Agency, Vancouver, V5Z 1L3, BC, Canada.
Scott BrownCanada's Michael Smith Genome Sciences Centre, BC Cancer Agency, Vancouver, V5Z 1L3, BC, Canada.
Artem BabaianTerry Fox Laboratory, BC Cancer Agency, Vancouver, V5Z 1L3, BC, Canada.
Xuehai WangTerry Fox Laboratory, BC Cancer Agency, Vancouver, V5Z 1L3, BC, Canada.
Robert A HoltCanada's Michael Smith Genome Sciences Centre, BC Cancer Agency, Vancouver, V5Z 1L3, BC, Canada.
Christian SteidlLymphoid Cancer Research, BC Cancer Agency, Vancouver, V5Z 1L3, BC, Canada.
Aly KarsanCanada's Michael Smith Genome Sciences Centre, BC Cancer Agency, Vancouver, V5Z 1L3, BC, Canada.
R Keith HumphriesTerry Fox Laboratory, BC Cancer Agency, Vancouver, V5Z 1L3, BC, Canada.
Connie J EavesTerry Fox Laboratory, BC Cancer Agency, Vancouver, V5Z 1L3, BC, Canada.ORCID http://orcid.org/0000-0002-3452-1926
Martin HirstDepartment of Microbiology and Immunology, Michael Smith Laboratories, University of British Columbia, Vancouver, V6T 1Z4, BC, Canada.ORCID http://orcid.org/0000-0001-9136-9054
Andrew P WengTerry Fox Laboratory, BC Cancer Agency, Vancouver, V5Z 1L3, BC, Canada. aweng@bccrc.ca.
BC Cancer Agency · CAUniversity of British Columbia · CA

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Mechanistic studies in human cancer have relied heavily on cell lines and mouse models, but are limited by in vitro adaptation and species context issues, respectively. More recent efforts have utilized patient-derived xenografts; however, these are hampered by variable genetic background, inability to study early events, and practical issues with availability/reproducibility. We report here an efficient, reproducible model of T-cell leukemia in which lentiviral transduction of normal human cord blood yields aggressive leukemia that appears indistinguishable from natural disease. We utilize this synthetic model to uncover a role for oncogene-induced HOXB activation which is operative in leukemia cells-of-origin and persists in established tumors where it defines a novel subset of patients distinct from other known genetic subtypes and with poor clinical outcome. We show further that anterior HOXB genes are specifically activated in human T-ALL by an epigenetic mechanism and confer growth advantage in both pre-leukemia cells and established clones.

Indexed as

Multigene FamilyAnimalsCell ProliferationEpigenesis, GeneticFemaleHeterograftsHomeodomain ProteinsHumansLeukemiaMaleMiceMice, Inbred NODModels, GeneticOncogene ProteinsHomeodomain ProteinsOncogene Proteins

Identifiers

PMID31266935
PMCPMC6606637
OpenAlexW2955671943

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.