Evidence map›Paper›PMID 31266899›Full record

ArticleThe Plant cell2019

Separating Golgi Proteins from

Harriet T Parsons, Tim J Stevens, Heather E McFarlane, Silvia Vidal-Melgosa, Johannes Griss, Nicola Lawrence, Richard Butler, Mirta M L Sousa, Michelle Salemi, William G T Willats and 3 more

Open access · bronzeAbstract read
In one paragraph

Article in The Plant cell, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed
3.6field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed, 46 citations in OpenAlex.

  1. Review
  2. NKS1/ELMO4 is an integral protein of a pectin synthesis protein complex and maintains Golgi morphology and cell adhesion inProceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  3. Review
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  5. Article
  6. Review
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  8. Review
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  15. Article
  16. Subcellular proteomics.Nature reviews. Methods primers · 2021
    Article
  17. Article
  18. Article
  19. Article
  20. Organellar Maps Through Proteomic Profiling - A Conceptual Guide.Molecular & cellular proteomics : MCP · 2020
    Review
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

13 authors at 8 institutions in 6 countries.

Harriet T ParsonsDepartment of Biochemistry, Cambridge University, Cambridge, CB2 1QW, United Kingdom tempeparsons@gmail.com.ORCID 0000-0003-1666-9123
Tim J StevensMRC Laboratory of Molecular Biology, Cambridge, CB2 0QH, United Kingdom.ORCID 0000-0001-6475-2074
Heather E McFarlaneSchool of Biosciences, University of Melbourne, Parkville VIC 3052, , Australia.ORCID 0000-0001-5569-5151
Silvia Vidal-MelgosaDepartment of Plant and Environmental Sciences, Copenhagen University, 1871 Frederiksberg C, Denmark.ORCID 0000-0002-9408-2849
Johannes GrissDepartment of Dermatology, Medical University of Vienna, 1090 Vienna, Austria.ORCID 0000-0003-2206-9511
Nicola LawrenceThe Wellcome Trust and Cancer Research UK Gurdon Institute, Cambridge University, Cambridge CB2 1QN, United Kingdom.ORCID 0000-0001-9773-2360
Richard ButlerThe Wellcome Trust and Cancer Research UK Gurdon Institute, Cambridge University, Cambridge CB2 1QN, United Kingdom.ORCID 0000-0002-3885-1332
Mirta M L SousaDepartment of Clinical and Molecular Medicine, Norwegian University of Science and Technology, 7491 Trondheim, Norway.ORCID 0000-0002-4559-2551
Michelle SalemiProteomics Core Facility, University of California, Davis, California 95616.ORCID 0000-0003-3990-7964
William G T WillatsDepartment of Plant and Environmental Sciences, Copenhagen University, 1871 Frederiksberg C, Denmark.ORCID 0000-0003-2064-4025
Christopher J PetzoldJoint BioEnergy Institute, Lawrence Berkeley National Laboratory, Berkeley, California 94720.ORCID 0000-0002-8270-5228
Joshua L HeazlewoodSchool of Biosciences, University of Melbourne, Parkville VIC 3052, , Australia.ORCID 0000-0002-2080-3826
Kathryn S LilleyDepartment of Biochemistry, Cambridge University, Cambridge, CB2 1QW, United Kingdom.ORCID 0000-0003-0594-6543
University of Cambridge · GBUniversity of Copenhagen · DKThe University of Melbourne · AUAbterra Biosciences (United States) · USEuropean Bioinformatics Institute · GBLawrence Berkeley National Laboratory · USMRC Laboratory of Molecular Biology · GBNorwegian University of Science and Technology · NO

Funding

Medical Research Council MC_U105178783
6 · The paper itself

Abstract

The order of enzymatic activity across Golgi cisternae is essential for complex molecule biosynthesis. However, an inability to separate Golgi cisternae has meant that the cisternal distribution of most resident proteins, and their underlying localization mechanisms, are unknown. Here, we exploit differences in surface charge of intact cisternae to perform separation of early to late Golgi subcompartments. We determine protein and glycan abundance profiles across the Golgi; over 390 resident proteins are identified, including 136 new additions, with over 180 cisternal assignments. These assignments provide a means to better understand the functional roles of Golgi proteins and how they operate sequentially. Protein and glycan distributions are validated in vivo using high-resolution microscopy. Results reveal distinct functional compartmentalization among resident Golgi proteins. Analysis of transmembrane proteins shows several sequence-based characteristics relating to pI, hydrophobicity, Ser abundance, and Phe bilayer asymmetry that change across the Golgi. Overall, our results suggest that a continuum of transmembrane features, rather than discrete rules, guide proteins to earlier or later locations within the Golgi stack.

Indexed as

Golgi ApparatusHydrophobic and Hydrophilic InteractionsIntracellular MembranesMembrane ProteinsPlant ProteinsPolysaccharidesProteomeMembrane ProteinsPlant ProteinsPolysaccharidesProteome

Identifiers

PMID31266899
PMCPMC6751122
OpenAlexW2955484752

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.