Evidence map›Paper›PMID 31266871›Full record

ArticlemBio2019

The Symmetrical Wave Pattern of Base-Pair Substitution Rates across the Escherichia coli Chromosome Has Multiple Causes.

Brittany A Niccum, Heewook Lee, Wazim MohammedIsmail, Haixu Tang, Patricia L Foster

Open access · goldAbstract read
In one paragraph

Article in mBio, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed
2.9field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed, 35 citations in OpenAlex.

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  14. Mutation bias and adaptation in bacteria.Microbiology (Reading, England) · 2023
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Brittany A NiccumDepartment of Biology, Indiana University, Bloomington, Indiana, USA.
Heewook LeeSchool of Informatics, Computing, and Engineering, Indiana University, Bloomington, Indiana, USA.
Wazim MohammedIsmailSchool of Informatics, Computing, and Engineering, Indiana University, Bloomington, Indiana, USA.
Haixu TangSchool of Informatics, Computing, and Engineering, Indiana University, Bloomington, Indiana, USA.
Patricia L FosterDepartment of Biology, Indiana University, Bloomington, Indiana, USA plfoster@indiana.edu.ORCID 0000-0002-7236-4378
Indiana University Bloomington · US

Funding

TRAINING IN GENETICST32GM007757 · NIGMS · TRUSTEES OF INDIANA UNIVERSITY · PI KUMAR, JUSTIN P · 1985 to 2014
$8.1M
NIGMS NIH HHS T32 GM007757
6 · The paper itself

Abstract

Mutation accumulation experiments followed by whole-genome sequencing have revealed that, for several bacterial species, the rate of base-pair substitutions (BPSs) is not constant across the chromosome but varies in a wave-like pattern that is symmetrical about the origin of replication. The experiments reported here demonstrated that, in

Indexed as

Base PairingChromosomes, BacterialMutation RatePoint MutationReplication OriginEscherichia coliEscherichia coli ProteinsNucleosidesSpatial AnalysisEscherichia coli ProteinsNucleosidesEscherichia colimismatch repairmutation accumulationmutation ratenucleoid-associated proteinsnucleoside triphosphate poolsproofreadingreplication timingwhole-genome sequencing

Identifiers

PMID31266871
PMCPMC6606806
OpenAlexW2954362551

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.