Evidence map›Paper›PMID 31266415›Full record

ArticleJournal of the Royal Society, Interface2019

Gaussian process emulation to accelerate parameter estimation in a mechanical model of the left ventricle: a critical step towards clinical end-user relevance.

Umberto Noè, Alan Lazarus, Hao Gao, Vinny Davies, Benn Macdonald, Kenneth Mangion, Colin Berry, Xiaoyu Luo, Dirk Husmeier

Abstract read
In one paragraph

Article in Journal of the Royal Society, Interface, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Review
  5. Article
  6. Article
  7. Bayesian optimisation for efficient parameter inference in a cardiac mechanics model of the left ventricle.International journal for numerical methods in biomedical engineering · 2022
    Article
  8. Article
  9. Article
  10. Uncertainty quantification and sensitivity analysis of left ventricular function during the full cardiac cycle.Philosophical transactions. Series A, Mathematical, physical, and engineering sciences · 2020
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Umberto Noè1 German Center for Neurodegenerative Diseases (DZNE) , Bonn , Germany.
Alan Lazarus2 School of Mathematics and Statistics, University of Glasgow , Glasgow , UK.
Hao Gao2 School of Mathematics and Statistics, University of Glasgow , Glasgow , UK.
Vinny Davies2 School of Mathematics and Statistics, University of Glasgow , Glasgow , UK.
Benn Macdonald2 School of Mathematics and Statistics, University of Glasgow , Glasgow , UK.
Kenneth Mangion4 BHF Glasgow Cardiovascular Research Centre, University of Glasgow , Glasgow , UK.
Colin Berry4 BHF Glasgow Cardiovascular Research Centre, University of Glasgow , Glasgow , UK.
Xiaoyu Luo2 School of Mathematics and Statistics, University of Glasgow , Glasgow , UK.
Dirk Husmeier2 School of Mathematics and Statistics, University of Glasgow , Glasgow , UK.

Funding

British Heart Foundation PG/11/2/28474British Heart Foundation PG/14/64/31043
6 · The paper itself

Abstract

In recent years, we have witnessed substantial advances in the mathematical modelling of the biomechanical processes underlying the dynamics of the cardiac soft-tissue. Gao et al. (Gao et al. 2017 J. R. Soc. Interface 14, 20170203 ( doi:10.1098/rsif.2017.0203 )) demonstrated that the parameters underlying the biomechanical model have diagnostic value for prognosticating the risk of myocardial infarction. However, the computational costs of parameter estimation are prohibitive when the goal lies in building real-time clinical decision support systems. This is due to the need to repeatedly solve the mathematical equations numerically using finite-element discretization during an iterative optimization routine. The present article presents a method for accelerating the inference of the constitutive parameters by using statistical emulation with Gaussian processes. We demonstrate how the computational costs can be reduced by about three orders of magnitude, with hardly any loss in accuracy, and we assess various alternative techniques in a comparative evaluation study based on simulated data obtained by solving the left ventricular model with the finite-element method, and real magnetic resonance images data for a human volunteer.

Indexed as

Computer SimulationHeart VentriclesMagnetic Resonance ImagingModels, CardiovascularMyocardial InfarctionHumansconstitutive parametersemulationfinite element discretizationLeft ventricular mechanicsparameter estimationsimulation

Identifiers

PMID31266415
PMCPMC6685034

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.