Evidence map›Paper›PMID 31264779›Full record

ArticleJournal of cellular and molecular medicine2019

A functional polymorphism in the promoter of TUG1 is associated with an increased risk of ischaemic stroke.

Ye-Sheng Wei, Jun Yang, Yong-Ling He, Xiang Shi, Zhi-Neng Zeng

Open access · goldAbstract read
In one paragraph

Article in Journal of cellular and molecular medicine, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
0.8field-weighted citation impact, top 35% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 14 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Ye-Sheng WeiDepartment of Laboratory Medicine, Affiliated Hospital of Guilin Medical University, Guilin, China.ORCID 0000-0002-3585-7325
Jun YangDepartment of Laboratory Medicine, Affiliated Hospital of Guilin Medical University, Guilin, China.
Yong-Ling HeDepartment of Laboratory Medicine, Affiliated Hospital of Guilin Medical University, Guilin, China.
Xiang ShiDepartment of Laboratory Medicine, Affiliated Hospital of Guilin Medical University, Guilin, China.
Zhi-Neng ZengDepartment of Laboratory Medicine, Affiliated Hospital of Guilin Medical University, Guilin, China.
Guilin Medical University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Taurine-upregulated gene 1 (TUG1), a kind of long non-coding RNAs (lncRNAs), was up-regulated in ischaemic stroke (IS) with the function of promoting neuron apoptosis. In this study, we aimed to investigate the association of TUG1 polymorphisms with IS risk. The TUG1 polymorphisms were genotyped using a custom-by-design 48-Plex SNPscan kit. The promoter activity was measured using the dual luciferase reporter assay. Relative expression of TUG1 in IS patients was analysed using quantitative PCR and the binding of TUG1 rs2240183 polymorphism to transcription factor was analysed using chromatin immunoprecipitation (ChIP) assay. The rs2240183 CT/CC genotypes and C allele in the promoter of TUG1 were associated with an increased risk of IS (CT/CC vs. TT: adjusted OR = 1.70, 95% CI, 1.16-2.49, P = 0.006; C vs. T: adjusted OR = 1.47, 95% CI, 1.12-1.93, P = 0.005). Logistic regression analysis showed that the rs2240183 was a risk factor of IS besides TC, TG, HDL-C, LDL-C, VLDL-C, Apo-A1, Apo-B and NEFA. Further functional analysis revealed that the TUG1 rs2240183 C allele exhibited higher transcriptional activity and TUG1 expression levels (P < 0.01). The ChIP assay showed that the rs2240183 C allele binds to transcriptional factor GATA-1. These findings indicate that the rs2240183 C allele was associated with a higher risk of IS possibly by binding to GATA-1 and elevating TUG1 levels.

Indexed as

Genetic Predisposition to DiseaseAllelesAnimalsApoptosisBrain IschemiaCell ProliferationFemaleGATA1 Transcription FactorGene Expression RegulationGenetic Association StudiesGenotypeHumansMaleMiceMiddle AgedPolymorphism, Single NucleotideGATA1 protein, humanGATA1 Transcription FactorRNA, Long NoncodingTUG1 long noncoding RNA, humanischaemic strokeluciferase activitypolymorphismtaurine-upregulated gene 1transcriptional factor

Identifiers

PMID31264779
PMCPMC6714496
OpenAlexW2954110767

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.