Evidence map›Paper›PMID 31263760›Full record

ArticleACS central science2019

Positioning-Group-Enabled Biocatalytic Oxidative Dearomatization.

Summer A Baker Dockrey, Carolyn E Suh, Attabey Rodríguez Benítez, Troy Wymore, Charles L Brooks, Alison R H Narayan

Abstract read
In one paragraph

Article in ACS central science, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Review
  6. Review
  7. Deciphering the evolution of flavin-dependent monooxygenase stereoselectivity using ancestral sequence reconstruction.Proceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  8. Chemoenzymatic Total Synthesis of Natural Products.Accounts of chemical research · 2021
    Review
  9. Article
  10. ACS central science · 2019
    Article
  11. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Summer A Baker DockreyDepartment of Chemistry, Life Sciences Institute, Program in Chemical Biology, and Department of Biophysics, University of Michigan, Ann Arbor, Michigan 48109, United States.
Carolyn E SuhDepartment of Chemistry, Life Sciences Institute, Program in Chemical Biology, and Department of Biophysics, University of Michigan, Ann Arbor, Michigan 48109, United States.
Attabey Rodríguez BenítezDepartment of Chemistry, Life Sciences Institute, Program in Chemical Biology, and Department of Biophysics, University of Michigan, Ann Arbor, Michigan 48109, United States.
Troy WymoreDepartment of Chemistry, Life Sciences Institute, Program in Chemical Biology, and Department of Biophysics, University of Michigan, Ann Arbor, Michigan 48109, United States.
Charles L BrooksDepartment of Chemistry, Life Sciences Institute, Program in Chemical Biology, and Department of Biophysics, University of Michigan, Ann Arbor, Michigan 48109, United States.
Alison R H NarayanDepartment of Chemistry, Life Sciences Institute, Program in Chemical Biology, and Department of Biophysics, University of Michigan, Ann Arbor, Michigan 48109, United States.

Funding

Theory and Modeling of Biomolecules and their Interactions - Equipment SupplementR35GM130587 · NIGMS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI CHARLES L BROOKS · 2019 to 2026
$6.9M
MICHIGAN CHEMISTRY-BIOLOGY INTERFACE TRAINING PROGRAMT32GM008597 · NIGMS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI MONTGOMERY, JOHN · 1996 to 2018
$5.0M
Undergrad Supplement: Expanding the synthetic utility of natural product biosynthetic enzymesR35GM124880 · NIGMS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI Alison Narayan · 2017 to 2026
$4.5M
NIGMS NIH HHS R35 GM124880NIGMS NIH HHS R35 GM130587NIGMS NIH HHS T32 GM008597
6 · The paper itself

Abstract

Biocatalysts have the potential to perform reactions with exceptional selectivity and high catalytic efficiency while utilizing safe and sustainable reagents. Despite these positive attributes, the utility of a biocatalyst can be limited by the breadth of substrates that can be accommodated in the active site in a reactive pose. Proven strategies exist for optimizing the performance of a biocatalyst toward unnatural substrates, including protein engineering; however, these methods can be time intensive and require specialized equipment that renders these approaches inaccessible to synthetic chemists. Strategies accessible to chemists for the expansion of a natural enzyme's substrate scope, while maintaining high levels of site- and stereoselectivity, remain elusive. Here, we employ a computationally guided substrate engineering strategy to expand the synthetic utility of a flavin-dependent monooxygenase. Specifically, experimental observations and computational modeling led to the identification of a critical interaction between the substrate and protein which is responsible for orienting the substrate in a pose productive for catalysis. The fundamental hypothesis for this positioning group strategy is supported by binding and kinetic assays as well as computational studies with a panel of compounds. Further, incorporation of this positioning group into substrates through a cleavable ester linkage transformed compounds not oxidized by the biocatalyst SorbC into substrates efficiently oxidatively dearomatized by the wild-type enzyme with the highest levels of site- and stereoselectivity known for this transformation.

Identifiers

PMID31263760
PMCPMC6598382

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.