Evidence map›Paper›PMID 31263571›Full record

ArticleNPJ genomic medicine2019

High frequency of pathogenic germline variants within homologous recombination repair in patients with advanced cancer.

Birgitte Bertelsen, Ida Viller Tuxen, Christina Westmose Yde, Migle Gabrielaite, Mathias Husted Torp, Savvas Kinalis, Olga Oestrup, Kristoffer Rohrberg, Iben Spangaard, Eric Santoni-Rugiu and 4 more

Open access · goldAbstract read
In one paragraph

Article in NPJ genomic medicine, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 51 papers, 4 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
51citing papers in PubMed, 4 pooled it
3.9field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

51 citing papers in PubMed, 4 syntheses or guidelines pooled it, 80 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 1 institution in 1 country.

Birgitte Bertelsen *1Center for Genomic Medicine, Rigshospitalet, Copenhagen, Denmark.
Ida Viller Tuxen *2The Phase I Unit, Department of Oncology, Rigshospitalet, Copenhagen, Denmark.
Christina Westmose Yde *1Center for Genomic Medicine, Rigshospitalet, Copenhagen, Denmark.
Migle Gabrielaite1Center for Genomic Medicine, Rigshospitalet, Copenhagen, Denmark.ORCID 0000-0002-7959-8767
Mathias Husted Torp1Center for Genomic Medicine, Rigshospitalet, Copenhagen, Denmark.
Savvas Kinalis1Center for Genomic Medicine, Rigshospitalet, Copenhagen, Denmark.
Olga Oestrup1Center for Genomic Medicine, Rigshospitalet, Copenhagen, Denmark.
Kristoffer Rohrberg2The Phase I Unit, Department of Oncology, Rigshospitalet, Copenhagen, Denmark.
Iben Spangaard2The Phase I Unit, Department of Oncology, Rigshospitalet, Copenhagen, Denmark.
Eric Santoni-Rugiu3Department of Pathology, Rigshospitalet, Copenhagen, Denmark.
Karin Wadt4Department of Clinical Genetics, Rigshospitalet, Copenhagen, Denmark.ORCID 0000-0003-2882-6798
Morten Mau-Sorensen2The Phase I Unit, Department of Oncology, Rigshospitalet, Copenhagen, Denmark.
Ulrik Lassen2The Phase I Unit, Department of Oncology, Rigshospitalet, Copenhagen, Denmark.
Finn Cilius Nielsen1Center for Genomic Medicine, Rigshospitalet, Copenhagen, Denmark.
Rigshospitalet · DK

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Genomic screening of cancer patients for predisposing variants is traditionally based on age at onset, family history and type of cancer. Whereas the clinical guidelines have proven efficient in identifying families exhibiting classical attributes of hereditary cancer, the frequency of patients with alternative presentations is unclear. We identified and characterized germline variants in 636 patients with advanced solid cancer using whole exome sequencing. Pathogenic and likely pathogenic germline variants among 168 genes associated with hereditary cancer were considered. These variants were identified in 17.8% of the patients and within a wide range of cancer types. In particular, patients with mesothelioma, ovarian cancer, cervical cancer, urothelial cancer, and cancer of unknown primary origin displayed high frequencies of pathogenic variants. Variants were predominantly found in DNA-repair pathways and about half were within genes involved in homologous recombination repair. Twenty-two

Indexed as

CancerCancer geneticsGenetic testing

Identifiers

PMID31263571
PMCPMC6588611
OpenAlexW2952669533

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.