Evidence map›Paper›PMID 31263216›Full record

ArticleGenetics in medicine : official journal of the American College of Medical Genetics2019

The Liberfarb syndrome, a multisystem disorder affecting eye, ear, bone, and brain development, is caused by a founder pathogenic variant in thePISD gene.

Virginie G Peter, Mathieu Quinodoz, Jorge Pinto-Basto, Sergio B Sousa, Silvio Alessandro Di Gioia, Gabriela Soares, Gabriela Ferraz Leal, Eduardo D Silva, Rosanna Pescini Gobert, Noriko Miyake and 7 more

Open access · bronzeAbstract readCase Reports
In one paragraph

Article in Genetics in medicine : official journal of the American College of Medical Genetics, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 29 papers.

0numbers the graph read from it
0cells of the map it votes in
29citing papers in PubMed
2.5field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

29 citing papers in PubMed, 49 citations in OpenAlex.

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  18. The Role of Impaired Mitochondrial Dynamics in MFN2-Mediated Pathology.Frontiers in cell and developmental biology · 2022
    Review
  19. Article
  20. [Advances in studies on genetics of syndromes combining sensorineural hearing loss with scoliosis].Lin chuang er bi yan hou tou jing wai ke za zhi = Journal of clinical otorhinolaryngology head and neck surgery · 2021
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors at 9 institutions in 6 countries.

Virginie G PeterDepartment of Computational Biology, University of Lausanne, Lausanne, Switzerland.ORCID http://orcid.org/0000-0001-8157-9568
Mathieu QuinodozDepartment of Computational Biology, University of Lausanne, Lausanne, Switzerland.ORCID http://orcid.org/0000-0002-9841-4433
Jorge Pinto-BastoCGC Genetics, Porto, Portugal.
Sergio B SousaMedical Genetics Unit, Hospital Pediátrico, Centro Hospitalar e Universitário de Coimbra, Coimbra, Portugal.
Silvio Alessandro Di GioiaBoston Children's Hospital and Harvard Medical School, Boston, MA, USA.ORCID http://orcid.org/0000-0002-7235-5682
Gabriela SoaresCenter for Medical Genetics Dr. Jacinto Magalhães, Porto Hospital Center, Porto, Portugal.
Gabriela Ferraz LealFernando Figueira Integral Medicine Institute, Recife, Brazil.
Eduardo D SilvaCentro Cirúrgico de Coimbra, Coimbra, Portugal.
Rosanna Pescini GobertDepartment of Computational Biology, University of Lausanne, Lausanne, Switzerland.ORCID http://orcid.org/0000-0002-2434-7530
Noriko MiyakeDepartment of Human Genetics, Graduate School of Medicine, Yokohama City University, Yokohama, Japan.
Naomichi MatsumotoDepartment of Human Genetics, Graduate School of Medicine, Yokohama City University, Yokohama, Japan.ORCID http://orcid.org/0000-0001-9846-6500
Elizabeth C EngleBoston Children's Hospital and Harvard Medical School, Boston, MA, USA.ORCID http://orcid.org/0000-0001-8194-7738
Sheila UngerDivision of Genetic Medicine, Lausanne University Hospital, Lausanne, Switzerland.
Frederic ShapiroDepartment of Medicine/Endocrinology, Stanford University School of Medicine, Palo Alto, CA, USA.
Andrea Superti-FurgaDivision of Genetic Medicine, Lausanne University Hospital, Lausanne, Switzerland. asuperti@unil.ch.ORCID http://orcid.org/0000-0002-3543-7531
Carlo RivoltaDepartment of Computational Biology, University of Lausanne, Lausanne, Switzerland. carlo.rivolta@iob.ch.ORCID http://orcid.org/0000-0002-0733-9950
Belinda Campos-XavierDivision of Genetic Medicine, Lausanne University Hospital, Lausanne, Switzerland.
University of Lausanne · CHHarvard University · USUniversity of Coimbra · PTYokohama City University · JPCentro de Genética Clínica · PTStanford University · USUniversidade de Pernambuco · BRUniversity of Basel · CHUniversity of Leicester · GB

Funding

Mouse Neurodevelopmental Behavior CoreU54HD090255 · NICHD · BOSTON CHILDREN'S HOSPITAL · PI SAHIN, MUSTAFA · 2016 to 2020
$5.2M
Howard Hughes Medical InstituteNICHD NIH HHS U54 HD090255
6 · The paper itself

Abstract

purposeWe observed four individuals in two unrelated but consanguineous families from Portugal and Brazil affected by early-onset retinal degeneration, sensorineural hearing loss, microcephaly, intellectual disability, and skeletal dysplasia with scoliosis and short stature. The phenotype precisely matched that of an individual of Azorean descent published in 1986 by Liberfarb and coworkers.

methodsPatients underwent specialized clinical examinations (including ophthalmological, audiological, orthopedic, radiological, and developmental assessment). Exome and targeted sequencing was performed on selected individuals. Minigene constructs were assessed by quantitative polymerase chain reaction (qPCR) and Sanger sequencing.

resultsAffected individuals shared a 3.36-Mb region of autozygosity on chromosome 22q12.2, including a 10-bp deletion (NM_014338.3:c.904-12_904-3delCTATCACCAC), immediately upstream of the last exon of the PISD (phosphatidylserine decarboxylase) gene. Sequencing of PISD from paraffin-embedded tissue from the 1986 case revealed the identical homozygous variant. In HEK293T cells, this variant led to aberrant splicing of PISD transcripts.

conclusionWe have identified the genetic etiology of the Liberfarb syndrome, affecting brain, eye, ear, bone, and connective tissue. Our work documents the migration of a rare Portuguese founder variant to two continents and highlights the link between phospholipid metabolism and bone formation, sensory defects, and cerebral development, while raising the possibility of therapeutic phospholipid replacement.

Indexed as

AdolescentAdultBrazilCarboxy-LyasesExomeFemaleGenotypeHearing Loss, SensorineuralHEK293 CellsHumansIntellectual DisabilityMaleMicrocephalyMusculoskeletal AbnormalitiesOsteochondrodysplasiasPedigreeCarboxy-Lyasesphosphatidylserine decarboxylaseLiberfarb syndromephospholipid metabolismPISDretinal degenerationskeletal dysplasia

Identifiers

PMID31263216
PMCPMC6892740
OpenAlexW2955865636

What OpenQuestion holds

Textmetadata
LicenceTDM
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.