Evidence map›Paper›PMID 31263215›Full record

ArticleGenetics in medicine : official journal of the American College of Medical Genetics2019

DYRK1A-related intellectual disability: a syndrome associated with congenital anomalies of the kidney and urinary tract.

Alexandria T M Blackburn, Nasim Bekheirnia, Vanessa C Uma, Mark E Corkins, Yuxiao Xu, Jill A Rosenfeld, Matthew N Bainbridge, Yaping Yang, Pengfei Liu, Suneeta Madan-Khetarpal and 19 more

Erratum issuedOpen access · bronzeAbstract read
In one paragraph

Article in Genetics in medicine : official journal of the American College of Medical Genetics, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
3.8field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 37 citations in OpenAlex.

  1. Review
  2. Article
  3. Review
  4. DYRK1A roles in human neural progenitors.Frontiers in neuroscience · 2025
    Article
  5. Article
  6. Article
  7. Article
  8. Review
  9. Article
  10. Review
  11. Review
  12. Integrative approach to interpret DYRK1A variants, leading to a frequent neurodevelopmental disorder.Genetics in medicine : official journal of the American College of Medical Genetics · 2021
    Article
  13. Article
  14. Article
  15. Review
  16. Aquatic models of human ciliary diseases.Genesis (New York, N.Y. : 2000) · 2021
    Review
  17. Review
  18. Review
  19. The neurodevelopmental disorder risk geneDevelopment (Cambridge, England) · 2020
    Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

29 authors at 16 institutions in 4 countries.

Alexandria T M BlackburnDepartment of Pediatrics, Pediatric Research Center, University of Texas Health Science Center, McGovern Medical School, Houston, TX, USA.ORCID http://orcid.org/0000-0003-2974-0339
Nasim BekheirniaRenal Section, Department of Pediatrics, Baylor College of Medicine, Houston, TX, USA.
Vanessa C UmaBaylor College of Medicine, Houston, TX, USA.
Mark E CorkinsDepartment of Pediatrics, Pediatric Research Center, University of Texas Health Science Center, McGovern Medical School, Houston, TX, USA.ORCID http://orcid.org/0000-0001-8261-6025
Yuxiao XuDepartment of Psychiatry, Weill Institute for Neurosciences, University of California, San Francisco, CA, USA.ORCID http://orcid.org/0000-0002-0802-845X
Jill A RosenfeldDepartment of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX, USA.ORCID http://orcid.org/0000-0001-5664-7987
Matthew N BainbridgeCodified Genomics, LLC, Houston, TX, USA.
Yaping YangDepartment of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX, USA.
Pengfei LiuBaylor College of Medicine, Houston, TX, USA.ORCID http://orcid.org/0000-0002-4177-709X
Suneeta Madan-KhetarpalChildren's Hospital of Pittsburgh of UPMC, University of Pittsburgh School of Medicine, Pittsburgh, PA, USA.
Mauricio R DelgadoDepartment of neurology and Neurotherapeutics, The University of Texas Southwestern Medical Center, Dallas, TX, USA.
Louanne HudginsDepartment of Pediatrics, Division of Medical Genetics, Stanford University, Stanford, CA, USA.
Ian KrantzDivision of Human Genetics, The Children's Hospital of Philadelphia and the Department of Pediatrics, Perelman School of medicine at University of Pennsylvania, Philadelphia, PA, USA.
David Rodriguez-BuriticaDepartment of Pediatrics, McGovern Medical School, The University of Texas Health Science Center at Houston, Houston, TX, USA.
Patricia G WheelerArnold Palmer Hospital, Orlando, FL, USA.
Lihadh Al-GazaliCollege of Medicine and Health Sciences, United Arab Emirates University, Al-Ain, United Arab Emirates.
Aisha Mohamed Saeed Mohamed Al ShamsiPaediatrics Department, Tawam Hospital, Al-Ain, United Arab Emirates.
Natalia Gomez-OspinaDepartment of Pediatrics, Division of Medical Genetics, Stanford University, Stanford, CA, USA.ORCID http://orcid.org/0000-0002-6740-1154
Hsiao-Tuan ChaoDepartment of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX, USA.ORCID http://orcid.org/0000-0002-2854-5470
Ghayda M MirzaaCenter for Integrative Brain Research, Seattle Children's Research Institute, Seattle, WA, USA.
Angela E ScheuerleDepartment of Pediatrics (Genetics and Metabolism), The University of Texas Southwestern Medical Center, Dallas, TX, USA.
Mary K KukolichClinical Genetics, Cook Children's Medical Center, Fort Worth, TX, USA.
Fernando ScagliaTexas Children's Hospital, Houston, TX, USA.
Christine EngBaylor College of Medicine, Houston, TX, USA.
Helen Rankin WillseyDepartment of Psychiatry, Weill Institute for Neurosciences, University of California, San Francisco, CA, USA.
Michael C BraunRenal Section, Department of Pediatrics, Baylor College of Medicine, Houston, TX, USA.
Dolores J LambDepartment of Urology and Center for Reproductive Genomics, Weill Cornell Medicine, New York, NY, USA.ORCID http://orcid.org/0000-0002-4389-5065
Rachel K MillerDepartment of Pediatrics, Pediatric Research Center, University of Texas Health Science Center, McGovern Medical School, Houston, TX, USA. Rachel.K.Miller@uth.tmc.edu.ORCID http://orcid.org/0000-0001-6381-7198
Mir Reza BekheirniaRenal Section, Department of Pediatrics, Baylor College of Medicine, Houston, TX, USA. bekheirn@bcm.edu.ORCID http://orcid.org/0000-0002-2889-4558
Baylor College of Medicine · USStanford University · USThe University of Texas MD Anderson Cancer Center · USThe University of Texas Southwestern Medical Center · USUniversity of California, San Francisco · USArnold Palmer Hospital for Children · USChildren's Hospital of Philadelphia · USChildren’s Institute · USCook Children's Medical Center · USCornell University · USTawam Hospital · AEThe University of Texas Health Science Center · USThe University of Texas Health Science Center at Houston · USUnited Arab Emirates University · AEUniversity of Pittsburgh · USUniversity of Washington · US

Funding

The Psychiatric Cell Map Initiative: Connecting Genomics, Subcellular Networks, and Higher Order PhenotypesU01MH115747 · NIMH · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI KAMPMANN, MARTIN, KROGAN, NEVAN J · 2018 to 2022
$19.6M
Multidisciplinary K12 Urologic Research (KURe) Career Development ProgramK12DK083014 · NIDDK · BAYLOR COLLEGE OF MEDICINE · PI LAMB, DOLORES JEAN · 2008 to 2017
$6.0M
Improving the Diagnosis of Congenital Genitourinary Defects.R01DK078121 · NIDDK · WEILL MEDICAL COLL OF CORNELL UNIV · PI LAMB, DOLORES JEAN · 2007 to 2021
$4.8M
Gene Expression in Amphibian DevelopmentR35GM127069 · NIGMS · UNIVERSITY OF CALIFORNIA BERKELEY · PI Richard M Harland · 2018 to 2026
$4.2M
Novel Role of Nephron Epithelialization in Nuclear SignalingR01DK115655 · NIDDK · UNIVERSITY OF TEXAS HLTH SCI CTR HOUSTON · PI Rachel Katherine Miller · 2019 to 2026
$2.3M
Genes and pathways underlying brain overgrowth and focal cortical malformationsK08NS092898 · NINDS · SEATTLE CHILDREN'S HOSPITAL · PI MIRZAA, GHAYDA · 2015 to 2019
$930k
The Role of Planar Cell Polarity Signals in Shaping Kidney TubulesK01DK092320 · NIDDK · UNIVERSITY OF TX MD ANDERSON CAN CTR · PI MILLER, RACHEL KATHERINE · 2012 to 2016
$584k
Identifying phenotypic convergence among autism spectrum disorder (ASD) genes using CRISPR/Cas9 in XenopusR21MH112158 · NIMH · UNIVERSITY OF CALIFORNIA BERKELEY · PI HARLAND, RICHARD M · 2017 to 2018
$417k
Role of p53 in Kidney Development: Modeling Renal Anomalies of Li-Fraumeni PatientsR03DK118771 · NIDDK · UNIVERSITY OF TEXAS HLTH SCI CTR HOUSTON · PI MILLER, RACHEL KATHERINE · 2018 to 2019
$231k
NIDDK NIH HHS DK0083014NIDDK NIH HHS K01 DK092320NIDDK NIH HHS K12 DK083014NIDDK NIH HHS R01 DK078121NIDDK NIH HHS R01 DK115655NIDDK NIH HHS R03 DK118771NIGMS NIH HHS R35 GM127069NIMH NIH HHS R21 MH112158NIMH NIH HHS U01 MH115747NINDS NIH HHS K08 NS092898
6 · The paper itself

Abstract

purposeHaploinsufficiency of DYRK1A causes a recognizable clinical syndrome. The goal of this paper is to investigate congenital anomalies of the kidney and urinary tract (CAKUT) and genital defects (GD) in patients with DYRK1A variants.

methodsA large database of clinical exome sequencing (ES) was queried for de novo DYRK1A variants and CAKUT/GD phenotypes were characterized. Xenopus laevis (frog) was chosen as a model organism to assess Dyrk1a's role in renal development.

resultsPhenotypic details and variants of 19 patients were compiled after an initial observation that one patient with a de novo pathogenic variant in DYRK1A had GD. CAKUT/GD data were available from 15 patients, 11 of whom presented with CAKUT/GD. Studies in Xenopus embryos demonstrated that knockdown of Dyrk1a, which is expressed in forming nephrons, disrupts the development of segments of embryonic nephrons, which ultimately give rise to the entire genitourinary (GU) tract. These defects could be rescued by coinjecting wild-type human DYRK1A RNA, but not with DYRK1A

conclusionEvidence supports routine GU screening of all individuals with de novo DYRK1A pathogenic variants to ensure optimized clinical management. Collectively, the reported clinical data and loss-of-function studies in Xenopus substantiate a novel role for DYRK1A in GU development.

Indexed as

AdolescentAdultAnimalsChildChild, PreschoolDatabases, GeneticDisease Models, AnimalDyrk KinasesExomeExome SequencingFemaleHaploinsufficiencyHumansIntellectual DisabilityKidneyMaleDyrk KinasesProtein Serine-Threonine KinasesProtein-Tyrosine KinasesCAKUTDYRK1Aexome sequencingkidneyXenopus

Identifiers

PMID31263215
PMCPMC6895419
OpenAlexW2953626879

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.