Evidence map›Paper›PMID 31262825›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2019

Mapping the native organization of the yeast nuclear pore complex using nuclear radial intensity measurements.

Pascal Vallotton, Sasikumar Rajoo, Matthias Wojtynek, Evgeny Onischenko, Annemarie Kralt, Carina Patrizia Derrer, Karsten Weis

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
1.4field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 20 citations in OpenAlex.

  1. Article
  2. Review
  3. The Molecular Architecture of the Nuclear Basket.bioRxiv : the preprint server for biology · 2024
    Article
  4. Article
  5. Review
  6. Review
  7. Article
  8. Article
  9. Review
  10. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 1 institution in 1 country.

Pascal VallottonInstitute of Biochemistry, Department of Biology, Swiss Federal Institute of Technology Zürich (ETH Zürich), 8093 Zürich, Switzerland; pascal.vallotton@bc.biol.ethz.ch karsten.weis@bc.biol.ethz.ch.
Sasikumar RajooInstitute of Biochemistry, Department of Biology, Swiss Federal Institute of Technology Zürich (ETH Zürich), 8093 Zürich, Switzerland.
Matthias WojtynekInstitute of Biochemistry, Department of Biology, Swiss Federal Institute of Technology Zürich (ETH Zürich), 8093 Zürich, Switzerland.
Evgeny OnischenkoInstitute of Biochemistry, Department of Biology, Swiss Federal Institute of Technology Zürich (ETH Zürich), 8093 Zürich, Switzerland.
Annemarie KraltInstitute of Biochemistry, Department of Biology, Swiss Federal Institute of Technology Zürich (ETH Zürich), 8093 Zürich, Switzerland.
Carina Patrizia DerrerInstitute of Biochemistry, Department of Biology, Swiss Federal Institute of Technology Zürich (ETH Zürich), 8093 Zürich, Switzerland.
Karsten WeisInstitute of Biochemistry, Department of Biology, Swiss Federal Institute of Technology Zürich (ETH Zürich), 8093 Zürich, Switzerland; pascal.vallotton@bc.biol.ethz.ch karsten.weis@bc.biol.ethz.ch.
ETH Zurich · CH

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Selective transport across the nuclear envelope (NE) is mediated by the nuclear pore complex (NPC), a massive ∼100-MDa assembly composed of multiple copies of ∼30 nuclear pore proteins (Nups). Recent advances have shed light on the composition and structure of NPCs, but approaches that could map their organization in live cells are still lacking. Here, we introduce an in vivo method to perform nuclear radial intensity measurements (NuRIM) using fluorescence microscopy to determine the average position of NE-localized proteins along the nucleocytoplasmic transport axis. We apply NuRIM to study the organization of the NPC and the mobile transport machinery in budding yeast. This reveals a unique snapshot of the intact yeast NPC and identifies distinct steady-state localizations for various NE-associated proteins and nuclear transport factors. We find that the NPC architecture is robust against compositional changes and could also confirm that in contrast to

Indexed as

Active Transport, Cell NucleusChlamydomonas reinhardtiiIntravital MicroscopyMicroscopy, FluorescenceNuclear PoreNuclear Pore Complex ProteinsSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsNuclear Pore Complex ProteinsSaccharomyces cerevisiae ProteinsFG repeatsnuclear pore complexnucleoporinsquantitative fluorescence microscopysuperresolution

Identifiers

PMID31262825
PMCPMC6642398
OpenAlexW2955600585

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.