Evidence map›Paper›PMID 31262809›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2019

Ambidextrous helical nanotubes from self-assembly of designed helical hairpin motifs.

Spencer A Hughes, Fengbin Wang, Shengyuan Wang, Mark A B Kreutzberger, Tomasz Osinski, Albina Orlova, Joseph S Wall, Xiaobing Zuo, Edward H Egelman, Vincent P Conticello

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
2.3field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 40 citations in OpenAlex.

  1. Designability of α-Helical Protein Filaments.Sub-cellular biochemistry · 2026
    Review
  2. Article
  3. Article
  4. Design, synthesis, and characterization of protein origami based on self-assembly of a brick and staple artificial protein pair.Proceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  5. Review
  6. Article
  7. Phenol-soluble modulins PSMα3 and PSMβ2 form nanotubes that are cross-α amyloids.Proceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  8. Atomic structure of Lanreotide nanotubes revealed by cryo-EM.Proceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  9. Review
  10. Article
  11. Article
  12. Article
  13. Article
  14. Quarterly reviews of biophysics · 2020
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 4 institutions in 1 country.

Spencer A HughesDepartment of Chemistry, Emory University, Atlanta, GA 30322.
Fengbin WangDepartment of Biochemistry and Molecular Genetics, University of Virginia, Charlottesville, VA 22908.
Shengyuan WangDepartment of Chemistry, Emory University, Atlanta, GA 30322.
Mark A B KreutzbergerDepartment of Biochemistry and Molecular Genetics, University of Virginia, Charlottesville, VA 22908.
Tomasz OsinskiDepartment of Biochemistry and Molecular Genetics, University of Virginia, Charlottesville, VA 22908.
Albina OrlovaDepartment of Biochemistry and Molecular Genetics, University of Virginia, Charlottesville, VA 22908.
Joseph S WallDepartment of Biology, Brookhaven National Laboratory, Upton, NY 11973.
Xiaobing ZuoX-Ray Science Division, Argonne National Laboratory, Argonne, IL 60439.
Edward H EgelmanDepartment of Biochemistry and Molecular Genetics, University of Virginia, Charlottesville, VA 22908.ORCID 0000-0003-4844-5212
Vincent P ConticelloDepartment of Chemistry, Emory University, Atlanta, GA 30322; vcontic@emory.edu.ORCID 0000-0001-6940-6947
University of Virginia · USEmory University · USArgonne National Laboratory · USBrookhaven National Laboratory · US

Funding

Molecular Electron Microscopy Core Facility ImprovementsG20RR031199 · NCRR · UNIVERSITY OF VIRGINIA · PI SHUPNIK, MARGARET A · 2010 to 2010
$2.0M
300 keV Liquid Helium Robotic MicroscopeS10RR025067 · NCRR · UNIVERSITY OF VIRGINIA · PI EGELMAN, EDWARD H. · 2009 to 2009
$2.0M
Training in Molecular BiophysicsT32GM080186 · NIGMS · UNIVERSITY OF VIRGINIA · PI NAKAMOTO, ROBERT K. · 2008 to 2019
$1.5M
Direct Electron Detector for a Titan Krios Robotic Electron Cryo-MicroscopeS10OD018149 · OD · UNIVERSITY OF VIRGINIA · PI EGELMAN, EDWARD H., YEAGER, MARK JAY · 2014 to 2014
$500k
NCI NIH HHS HHSN261200800001ENCRR NIH HHS G20 RR031199NCRR NIH HHS S10 RR025067NIGMS NIH HHS T32 GM080186NIH HHS S10 OD018149
6 · The paper itself

Abstract

Tandem repeat proteins exhibit native designability and represent potentially useful scaffolds for the construction of synthetic biomimetic assemblies. We have designed 2 synthetic peptides, HEAT_R1 and LRV_M3Δ1, based on the consensus sequences of single repeats of thermophilic HEAT (PBS_HEAT) and Leucine-Rich Variant (LRV) structural motifs, respectively. Self-assembly of the peptides afforded high-aspect ratio helical nanotubes. Cryo-electron microscopy with direct electron detection was employed to analyze the structures of the solvated filaments. The 3D reconstructions from the cryo-EM maps led to atomic models for the HEAT_R1 and LRV_M3Δ1 filaments at resolutions of 6.0 and 4.4 Å, respectively. Surprisingly, despite sequence similarity at the lateral packing interface, HEAT_R1 and LRV_M3Δ1 filaments adopt the opposite helical hand and differ significantly in helical geometry, while retaining a local conformation similar to previously characterized repeat proteins of the same class. The differences in the 2 filaments could be rationalized on the basis of differences in cohesive interactions at the lateral and axial interfaces. These structural data reinforce previous observations regarding the structural plasticity of helical protein assemblies and the need for high-resolution structural analysis. Despite these observations, the native designability of tandem repeat proteins offers the opportunity to engineer novel helical nanotubes. Moreover, the resultant nanotubes have independently addressable and chemically distinguishable interior and exterior surfaces that would facilitate applications in selective recognition, transport, and release.

Indexed as

Helix-Loop-Helix MotifsCryoelectron MicroscopyImaging, Three-DimensionalModels, MolecularNanotubesPeptidesProtein Conformation, alpha-HelicalTandem Repeat SequencesPeptidescryo-EMhelical nanotubeself-assemblytandem repeat proteins

Identifiers

PMID31262809
PMCPMC6642399
OpenAlexW2954032044

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.