Evidence map›Paper›PMID 31262721›Full record

ArticleBiology open2019

In the human sperm nucleus, nucleosomes form spatially restricted domains consistent with programmed nucleosome positioning.

Mei-Zi Zhang, Xiao-Min Cao, Feng-Qin Xu, Xiao-Wei Liang, Long-Long Fu, Bao Li, Wei-Guang Liu, Shuo-Guo Li, Fang-Zhen Sun, Xiu-Ying Huang and 1 more

Open access · goldAbstract read
In one paragraph

Article in Biology open, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
0.7field-weighted citation impact, top 25% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 3 citations in OpenAlex.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 3 institutions in 1 country.

Mei-Zi ZhangReproductive Medicine Center, Tianjin First central hospital, Tianjin 300192, China.
Xiao-Min CaoReproductive Medicine Center, Tianjin First central hospital, Tianjin 300192, China.
Feng-Qin XuReproductive Medicine Center, Tianjin First central hospital, Tianjin 300192, China.
Xiao-Wei LiangBejing Human Sperm Bank and National Research Institute for Family Planning, Beijing 100101, China.
Long-Long FuBejing Human Sperm Bank and National Research Institute for Family Planning, Beijing 100101, China.
Bao LiDepartment of Urology, Affiliated Hospital of Weifang Medical University, 261000 Weifang, Shandong, China.
Wei-Guang LiuDepartment of Urology, Affiliated Hospital of Weifang Medical University, 261000 Weifang, Shandong, China huang343@genetics.ac.cn wkx308@126.com.
Shuo-Guo LiCenter for Biological Imaging, Institute of Biophysics, Chinese Academy of Sciences, Beijing 100101, China.
Fang-Zhen SunState Key Laboratory of Molecular Developmental Biology, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing 100101, China.
Xiu-Ying HuangState Key Laboratory of Molecular Developmental Biology, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing 100101, China.
Wei-Hong HuangDepartment of Urology, Affiliated Hospital of Weifang Medical University, 261000 Weifang, Shandong, China huang343@genetics.ac.cn wkx308@126.com.ORCID http://orcid.org/0000-0001-6206-9909
Chinese Academy of Sciences · CNTianjin First Center Hospital · CNWeifang Medical University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

In human sperm, a fraction of its chromatin retains nucleosomes that are positioned on specific sequences containing genes and regulatory units essential for embryonic development. This nucleosome positioning (NP) feature provides an inherited epigenetic mark for sperm. However, it is not known whether there is a structural constraint for these nucleosomes and, if so, how they are localized in a three-dimensional (3D) context of the sperm nucleus. In this study, we examine the 3D organization of sperm chromatin and specifically determine its 3D localization of nucleosomes using structured illumination microscopy. A fraction of the sperm chromatin form nucleosome domains (NDs), visible as microscopic puncta ranging from 40 μm to 700 μm in diameter, and these NDs are precisely localized in the post acrosome region (PAR), outside the sperm's core chromatin. Further, NDs exist mainly in sperm from fertile men in a pilot survey with a small sample size. Together, this study uncovers a new spatially-restricted sub-nuclear structure containing NDs that are consistent with NPs of the sperm, which might represent a novel mark for healthy sperm in human.

Indexed as

ChromatinDomainHuman spermNucleosome

Identifiers

PMID31262721
PMCPMC6679404
OpenAlexW2955273553

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.